Strain Fitness in Erwinia tracheiphila SCR3 around LU632_RS22930

Experiment: Experiment:TE2, Cucumber 5 Petiole 1 (TE2-S-C5-P1)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Experiment:TE2, Cucumber 5 Petiole 1 (TE2-S-C5-P1)
4,366,444	+	hslO	LU632_RS22925	0.48	-0.7
4,366,445	-	hslO	LU632_RS22925	0.49	+0.6
4,366,445	-	hslO	LU632_RS22925	0.49	-2.1
4,366,483	-	hslO	LU632_RS22925	0.53	+1.2
4,366,620	-	hslO	LU632_RS22925	0.68	+0.1
4,366,640	+	hslO	LU632_RS22925	0.71	+1.8
4,366,641	-	hslO	LU632_RS22925	0.71	-0.2
4,366,739	+	hslO	LU632_RS22925	0.82	-1.1
4,366,964	-				-0.8
4,367,117	-				-0.0
4,367,117	-				-0.5
4,367,232	+				-1.0
4,367,233	-				-1.3
4,367,233	-				+0.2
4,367,233	-				-1.4
4,367,233	-				-0.6
4,367,235	-				-0.4
4,367,433	+	pckA	LU632_RS22930	0.12	+1.2
4,367,433	+	pckA	LU632_RS22930	0.12	+1.2
4,367,433	+	pckA	LU632_RS22930	0.12	-0.5
4,367,433	+	pckA	LU632_RS22930	0.12	-0.6
4,367,433	+	pckA	LU632_RS22930	0.12	-1.8
4,367,434	-	pckA	LU632_RS22930	0.12	+0.2
4,367,437	+	pckA	LU632_RS22930	0.12	-0.6
4,367,437	+	pckA	LU632_RS22930	0.12	-3.4
4,367,604	+	pckA	LU632_RS22930	0.23	+1.2
4,367,806	-	pckA	LU632_RS22930	0.35	-2.0
4,367,810	+	pckA	LU632_RS22930	0.36	+1.6
4,367,887	+	pckA	LU632_RS22930	0.40	+0.2
4,367,887	+	pckA	LU632_RS22930	0.40	-0.6
4,367,887	+	pckA	LU632_RS22930	0.40	-2.1
4,367,888	-	pckA	LU632_RS22930	0.40	-2.4
4,367,888	-	pckA	LU632_RS22930	0.40	+0.2
4,368,016	-	pckA	LU632_RS22930	0.48	-1.1
4,368,060	-	pckA	LU632_RS22930	0.51	-0.7
4,368,063	+	pckA	LU632_RS22930	0.51	-0.8
4,368,064	-	pckA	LU632_RS22930	0.51	-0.8
4,368,088	-	pckA	LU632_RS22930	0.53	+1.4
4,368,246	+	pckA	LU632_RS22930	0.63	-0.4
4,368,546	+	pckA	LU632_RS22930	0.81	-1.6
4,368,546	+	pckA	LU632_RS22930	0.81	+1.2
4,368,546	+	pckA	LU632_RS22930	0.81	-0.5
4,368,547	-	pckA	LU632_RS22930	0.81	-2.6
4,368,573	+	pckA	LU632_RS22930	0.83	-1.3
4,368,656	+	pckA	LU632_RS22930	0.88	-0.8
4,368,660	+	pckA	LU632_RS22930	0.88	-0.4
4,368,660	+	pckA	LU632_RS22930	0.88	-2.0
4,368,724	+				+1.1
4,368,724	+				+1.6
4,368,724	+				-0.3
4,368,725	-				+0.5
4,368,796	+				+0.0
4,368,797	-				-1.4
4,368,797	-				+0.2
4,368,797	-				-0.2
4,368,799	-				-2.4
4,368,860	+				+0.3
4,368,919	-				-0.8
4,368,938	-				-0.8
4,368,956	-				-2.0
4,368,968	+				-2.0
4,368,968	+				-0.1
4,368,968	+				-1.6
4,368,969	-				-0.1
4,368,971	-				+0.2
4,368,989	-				-1.0
4,369,009	+				-0.6
4,369,010	-				+1.8
4,369,046	+				-0.0
4,369,047	-				-0.3
4,369,113	-				+0.6
4,369,160	+				+0.5
4,369,208	+				-2.1
4,369,338	+				+0.8
4,369,450	+				-0.1
4,369,462	-				-0.7
4,369,467	+				+0.2
4,369,468	-				-1.2
4,369,520	-				+0.6
4,369,620	+				-1.4
4,369,621	-				+0.2
4,369,653	-				-2.4
4,369,811	+	envZ	LU632_RS22935	0.21	+0.2
4,369,835	-	envZ	LU632_RS22935	0.22	-0.8