Strain Fitness in Erwinia tracheiphila SCR3 around LU632_RS22835

Experiment: Experiment:TE2, Cucumber 5 Petiole 1 (TE2-S-C5-P1)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Experiment:TE2, Cucumber 5 Petiole 1 (TE2-S-C5-P1)
4,347,438	+		LU632_RS22830	0.40	+0.6
4,347,438	+		LU632_RS22830	0.40	-1.4
4,347,438	+		LU632_RS22830	0.40	+1.2
4,347,438	+		LU632_RS22830	0.40	+0.8
4,347,438	+		LU632_RS22830	0.40	+1.4
4,347,438	+		LU632_RS22830	0.40	-0.8
4,347,439	-		LU632_RS22830	0.40	+1.5
4,347,439	-		LU632_RS22830	0.40	-0.1
4,347,439	-		LU632_RS22830	0.40	+0.2
4,347,440	+		LU632_RS22830	0.40	+0.9
4,347,440	+		LU632_RS22830	0.40	-0.8
4,347,453	-		LU632_RS22830	0.41	+0.2
4,347,582	+		LU632_RS22830	0.51	-0.8
4,347,583	-		LU632_RS22830	0.51	+1.2
4,347,583	-		LU632_RS22830	0.51	-1.1
4,347,587	+		LU632_RS22830	0.52	+1.2
4,347,587	+		LU632_RS22830	0.52	+1.0
4,347,590	+		LU632_RS22830	0.52	+0.8
4,347,591	-		LU632_RS22830	0.52	-1.0
4,347,591	-		LU632_RS22830	0.52	+1.8
4,347,741	-		LU632_RS22830	0.64	-0.8
4,347,907	+		LU632_RS22830	0.77	-0.1
4,347,922	+		LU632_RS22830	0.78	-1.8
4,347,922	+		LU632_RS22830	0.78	-0.8
4,347,923	-		LU632_RS22830	0.78	+0.9
4,347,923	-		LU632_RS22830	0.78	-0.2
4,348,012	-		LU632_RS22830	0.85	-1.1
4,348,138	-				-2.3
4,348,193	+				-1.8
4,348,237	+				-2.6
4,348,237	+				+1.7
4,348,244	+				+1.1
4,348,270	-				+1.8
4,348,331	-				+1.2
4,348,331	-				+1.2
4,348,334	+				-1.7
4,348,335	-				-0.4
4,348,335	-				-2.3
4,348,335	-				+0.9
4,348,335	-				-2.1
4,348,335	-				-0.8
4,348,335	-				+0.8
4,348,370	-				-0.1
4,348,408	-				-2.0
4,348,408	-				+0.5
4,348,408	-				-0.2
4,348,408	-				-0.4
4,348,412	+				-0.4
4,348,412	+				-1.8
4,348,476	+		LU632_RS22835	0.24	+3.0
4,348,476	+		LU632_RS22835	0.24	+0.2
4,348,477	-		LU632_RS22835	0.24	-1.6
4,348,480	+		LU632_RS22835	0.25	-1.8
4,348,481	-		LU632_RS22835	0.25	+0.5
4,348,481	-		LU632_RS22835	0.25	-1.6
4,348,481	-		LU632_RS22835	0.25	+0.2
4,348,526	+		LU632_RS22835	0.36	-3.2
4,348,526	+		LU632_RS22835	0.36	+0.4
4,348,526	+		LU632_RS22835	0.36	+2.3
4,348,527	-		LU632_RS22835	0.36	-4.1
4,348,565	-		LU632_RS22835	0.45	+0.8
4,348,662	+		LU632_RS22835	0.67	+0.4
4,348,662	+		LU632_RS22835	0.67	+0.5
4,348,662	+		LU632_RS22835	0.67	+0.3
4,348,663	-		LU632_RS22835	0.67	+1.1
4,348,663	-		LU632_RS22835	0.67	-1.4
4,348,668	-		LU632_RS22835	0.68	+1.0
4,348,770	-				+2.8
4,348,785	+				-0.4