Experiment: Experiment:TE2, Cucumber 5 Petiole 1 (TE2-S-C5-P1)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt tusD and LU632_RS22710 overlap by 1 nucleotides LU632_RS22710 and fkpA are separated by 196 nucleotides fkpA and LU632_RS22720 are separated by 286 nucleotides LU632_RS22720 and slyD are separated by 130 nucleotides
LU632_RS22705: tusD - sulfurtransferase complex subunit TusD, at 4,323,327 to 4,323,713
tusD
LU632_RS22710: LU632_RS22710 - transcriptional regulator, at 4,323,713 to 4,324,435
_RS22710
LU632_RS22715: fkpA - FKBP-type peptidyl-prolyl cis-trans isomerase, at 4,324,632 to 4,325,471
fkpA
LU632_RS22720: LU632_RS22720 - SlyX family protein, at 4,325,758 to 4,325,973
_RS22720
LU632_RS22725: slyD - peptidylprolyl isomerase, at 4,326,104 to 4,326,625
slyD
Position (kb) 4324
4325
4326 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3
4 at 4324.109 kb on - strand, within LU632_RS22710 at 4324.138 kb on - strand, within LU632_RS22710 at 4324.138 kb on - strand, within LU632_RS22710 at 4324.138 kb on - strand, within LU632_RS22710 at 4324.154 kb on - strand, within LU632_RS22710 at 4324.229 kb on - strand, within LU632_RS22710 at 4324.342 kb on - strand, within LU632_RS22710 at 4324.342 kb on - strand, within LU632_RS22710 at 4324.422 kb on - strand at 4324.624 kb on + strand at 4324.624 kb on + strand at 4324.634 kb on - strand at 4324.634 kb on - strand at 4324.802 kb on + strand, within fkpA at 4324.901 kb on + strand, within fkpA at 4324.934 kb on + strand, within fkpA at 4324.936 kb on + strand, within fkpA at 4324.940 kb on + strand, within fkpA at 4324.941 kb on - strand, within fkpA at 4324.944 kb on + strand, within fkpA at 4324.945 kb on - strand, within fkpA at 4325.272 kb on + strand, within fkpA at 4325.272 kb on + strand, within fkpA at 4325.451 kb on - strand at 4325.529 kb on + strand at 4325.581 kb on + strand at 4325.581 kb on + strand at 4325.650 kb on - strand at 4325.686 kb on - strand at 4325.847 kb on + strand, within LU632_RS22720 at 4325.847 kb on + strand, within LU632_RS22720 at 4325.847 kb on + strand, within LU632_RS22720 at 4325.848 kb on - strand, within LU632_RS22720 at 4325.888 kb on + strand, within LU632_RS22720 at 4325.968 kb on + strand at 4325.969 kb on - strand at 4325.972 kb on - strand at 4325.972 kb on - strand at 4326.016 kb on - strand at 4326.236 kb on - strand, within slyD at 4326.236 kb on - strand, within slyD at 4326.299 kb on + strand, within slyD at 4326.423 kb on + strand, within slyD
Per-strain Table
Position Strand Gene LocusTag Fraction Experiment:TE2, Cucumber 5 Petiole 1 (TE2-S-C5-P1) remove 4,324,109 - LU632_RS22710 0.55 -0.6 4,324,138 - LU632_RS22710 0.59 +1.2 4,324,138 - LU632_RS22710 0.59 +0.4 4,324,138 - LU632_RS22710 0.59 -0.2 4,324,154 - LU632_RS22710 0.61 -1.8 4,324,229 - LU632_RS22710 0.71 +1.2 4,324,342 - LU632_RS22710 0.87 -2.8 4,324,342 - LU632_RS22710 0.87 -0.3 4,324,422 - +1.2 4,324,624 + +0.2 4,324,624 + -0.2 4,324,634 - -0.7 4,324,634 - -1.4 4,324,802 + fkpA LU632_RS22715 0.20 +3.4 4,324,901 + fkpA LU632_RS22715 0.32 -0.8 4,324,934 + fkpA LU632_RS22715 0.36 +2.8 4,324,936 + fkpA LU632_RS22715 0.36 +4.3 4,324,940 + fkpA LU632_RS22715 0.37 +1.2 4,324,941 - fkpA LU632_RS22715 0.37 +2.6 4,324,944 + fkpA LU632_RS22715 0.37 +2.9 4,324,945 - fkpA LU632_RS22715 0.37 +0.8 4,325,272 + fkpA LU632_RS22715 0.76 +1.5 4,325,272 + fkpA LU632_RS22715 0.76 +2.5 4,325,451 - -1.3 4,325,529 + -0.5 4,325,581 + +2.1 4,325,581 + -2.0 4,325,650 - -0.4 4,325,686 - -2.1 4,325,847 + LU632_RS22720 0.41 -0.4 4,325,847 + LU632_RS22720 0.41 +1.1 4,325,847 + LU632_RS22720 0.41 -2.0 4,325,848 - LU632_RS22720 0.42 +2.4 4,325,888 + LU632_RS22720 0.60 -1.4 4,325,968 + +0.8 4,325,969 - -1.1 4,325,972 - -1.2 4,325,972 - +0.3 4,326,016 - -2.0 4,326,236 - slyD LU632_RS22725 0.25 -1.0 4,326,236 - slyD LU632_RS22725 0.25 +1.2 4,326,299 + slyD LU632_RS22725 0.37 -0.4 4,326,423 + slyD LU632_RS22725 0.61 +0.7
Or see this region's nucleotide sequence