Experiment: Experiment:TE2, Cucumber 5 Petiole 1 (TE2-S-C5-P1)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ligB and LU632_RS22220 overlap by 26 nucleotides LU632_RS22220 and LU632_RS22225 are separated by 184 nucleotides LU632_RS22225 and LU632_RS22230 are separated by 196 nucleotides LU632_RS22230 and LU632_RS22235 are separated by 2 nucleotides LU632_RS22235 and LU632_RS22240 overlap by 11 nucleotides
LU632_RS22215: ligB - NAD-dependent DNA ligase LigB, at 4,247,224 to 4,248,915
ligB
LU632_RS22220: LU632_RS22220 - trimeric intracellular cation channel family protein, at 4,248,890 to 4,248,973
_RS22220
LU632_RS22225: LU632_RS22225 - alkylphosphonate utilization protein, at 4,249,158 to 4,249,490
_RS22225
LU632_RS22230: LU632_RS22230 - helix-turn-helix domain-containing protein, at 4,249,687 to 4,251,666
_RS22230
LU632_RS22235: LU632_RS22235 - AzlC family ABC transporter permease, at 4,251,669 to 4,252,367
_RS22235
LU632_RS22240: LU632_RS22240 - AzlD domain-containing protein, at 4,252,357 to 4,252,707
_RS22240
Position (kb) 4249
4250
4251
4252 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3
4
5
6
7 at 4248.720 kb on + strand, within ligB at 4248.720 kb on + strand, within ligB at 4248.720 kb on + strand, within ligB at 4248.720 kb on + strand, within ligB at 4248.739 kb on - strand, within ligB at 4248.820 kb on - strand at 4248.935 kb on - strand, within LU632_RS22220 at 4248.935 kb on - strand, within LU632_RS22220 at 4248.935 kb on - strand, within LU632_RS22220 at 4248.990 kb on + strand at 4248.991 kb on - strand at 4249.012 kb on + strand at 4249.068 kb on + strand at 4249.069 kb on - strand at 4249.226 kb on + strand, within LU632_RS22225 at 4249.257 kb on + strand, within LU632_RS22225 at 4249.315 kb on - strand, within LU632_RS22225 at 4249.424 kb on + strand, within LU632_RS22225 at 4249.449 kb on - strand, within LU632_RS22225 at 4249.491 kb on - strand at 4249.514 kb on - strand at 4249.514 kb on - strand at 4249.559 kb on + strand at 4249.560 kb on - strand at 4249.560 kb on - strand at 4249.560 kb on - strand at 4249.615 kb on + strand at 4249.669 kb on + strand at 4249.806 kb on + strand at 4249.842 kb on + strand at 4249.971 kb on + strand, within LU632_RS22230 at 4250.002 kb on + strand, within LU632_RS22230 at 4250.002 kb on + strand, within LU632_RS22230 at 4250.015 kb on + strand, within LU632_RS22230 at 4250.016 kb on - strand, within LU632_RS22230 at 4250.016 kb on - strand, within LU632_RS22230 at 4250.050 kb on - strand, within LU632_RS22230 at 4250.160 kb on + strand, within LU632_RS22230 at 4250.161 kb on - strand, within LU632_RS22230 at 4250.162 kb on + strand, within LU632_RS22230 at 4250.162 kb on + strand, within LU632_RS22230 at 4250.163 kb on - strand, within LU632_RS22230 at 4250.218 kb on + strand, within LU632_RS22230 at 4250.251 kb on + strand, within LU632_RS22230 at 4250.257 kb on - strand, within LU632_RS22230 at 4250.257 kb on - strand, within LU632_RS22230 at 4250.417 kb on + strand, within LU632_RS22230 at 4250.418 kb on - strand, within LU632_RS22230 at 4250.449 kb on + strand, within LU632_RS22230 at 4250.450 kb on - strand, within LU632_RS22230 at 4250.566 kb on - strand, within LU632_RS22230 at 4250.625 kb on - strand, within LU632_RS22230 at 4250.625 kb on - strand, within LU632_RS22230 at 4250.627 kb on + strand, within LU632_RS22230 at 4250.672 kb on + strand, within LU632_RS22230 at 4250.672 kb on + strand, within LU632_RS22230 at 4250.673 kb on - strand, within LU632_RS22230 at 4250.673 kb on - strand, within LU632_RS22230 at 4250.695 kb on + strand, within LU632_RS22230 at 4250.741 kb on + strand, within LU632_RS22230 at 4250.779 kb on - strand, within LU632_RS22230 at 4250.794 kb on + strand, within LU632_RS22230 at 4250.794 kb on + strand, within LU632_RS22230 at 4250.794 kb on + strand, within LU632_RS22230 at 4250.795 kb on - strand, within LU632_RS22230 at 4250.795 kb on - strand, within LU632_RS22230 at 4250.795 kb on - strand, within LU632_RS22230 at 4250.795 kb on - strand, within LU632_RS22230 at 4250.795 kb on - strand, within LU632_RS22230 at 4250.795 kb on - strand, within LU632_RS22230 at 4250.795 kb on - strand, within LU632_RS22230 at 4250.795 kb on - strand, within LU632_RS22230 at 4250.795 kb on - strand, within LU632_RS22230 at 4250.943 kb on - strand, within LU632_RS22230 at 4251.032 kb on - strand, within LU632_RS22230 at 4251.091 kb on - strand, within LU632_RS22230 at 4251.210 kb on + strand, within LU632_RS22230 at 4251.222 kb on + strand, within LU632_RS22230 at 4251.248 kb on + strand, within LU632_RS22230 at 4251.249 kb on - strand, within LU632_RS22230 at 4251.249 kb on - strand, within LU632_RS22230 at 4251.249 kb on - strand, within LU632_RS22230 at 4251.253 kb on + strand, within LU632_RS22230 at 4251.253 kb on + strand, within LU632_RS22230 at 4251.253 kb on + strand, within LU632_RS22230 at 4251.254 kb on - strand, within LU632_RS22230 at 4251.254 kb on - strand, within LU632_RS22230 at 4251.254 kb on - strand, within LU632_RS22230 at 4251.254 kb on - strand, within LU632_RS22230 at 4251.255 kb on + strand, within LU632_RS22230 at 4251.256 kb on - strand, within LU632_RS22230 at 4251.351 kb on - strand, within LU632_RS22230 at 4251.420 kb on + strand, within LU632_RS22230 at 4251.421 kb on - strand, within LU632_RS22230 at 4251.426 kb on - strand, within LU632_RS22230 at 4251.456 kb on - strand, within LU632_RS22230 at 4251.515 kb on - strand at 4251.650 kb on + strand at 4251.651 kb on - strand at 4251.651 kb on - strand at 4251.668 kb on + strand at 4251.677 kb on + strand at 4251.678 kb on - strand at 4251.697 kb on + strand at 4251.835 kb on + strand, within LU632_RS22235 at 4251.836 kb on - strand, within LU632_RS22235 at 4251.871 kb on - strand, within LU632_RS22235 at 4251.916 kb on + strand, within LU632_RS22235 at 4251.916 kb on + strand, within LU632_RS22235 at 4251.917 kb on - strand, within LU632_RS22235 at 4251.917 kb on - strand, within LU632_RS22235 at 4251.917 kb on - strand, within LU632_RS22235 at 4251.917 kb on - strand, within LU632_RS22235 at 4251.918 kb on + strand, within LU632_RS22235 at 4251.918 kb on + strand, within LU632_RS22235 at 4251.919 kb on - strand, within LU632_RS22235 at 4251.919 kb on - strand, within LU632_RS22235 at 4251.919 kb on - strand, within LU632_RS22235 at 4251.919 kb on - strand, within LU632_RS22235 at 4251.919 kb on - strand, within LU632_RS22235 at 4251.919 kb on - strand, within LU632_RS22235 at 4251.919 kb on - strand, within LU632_RS22235 at 4251.919 kb on - strand, within LU632_RS22235 at 4251.919 kb on - strand, within LU632_RS22235 at 4252.073 kb on - strand, within LU632_RS22235 at 4252.081 kb on - strand, within LU632_RS22235 at 4252.133 kb on - strand, within LU632_RS22235 at 4252.269 kb on + strand, within LU632_RS22235 at 4252.282 kb on + strand, within LU632_RS22235 at 4252.283 kb on - strand, within LU632_RS22235 at 4252.356 kb on + strand at 4252.356 kb on + strand at 4252.356 kb on + strand at 4252.357 kb on - strand at 4252.357 kb on - strand at 4252.431 kb on + strand, within LU632_RS22240 at 4252.431 kb on + strand, within LU632_RS22240 at 4252.539 kb on + strand, within LU632_RS22240 at 4252.586 kb on + strand, within LU632_RS22240 at 4252.586 kb on + strand, within LU632_RS22240 at 4252.587 kb on - strand, within LU632_RS22240 at 4252.591 kb on + strand, within LU632_RS22240 at 4252.604 kb on + strand, within LU632_RS22240 at 4252.605 kb on - strand, within LU632_RS22240 at 4252.608 kb on - strand, within LU632_RS22240 at 4252.608 kb on - strand, within LU632_RS22240 at 4252.611 kb on - strand, within LU632_RS22240 at 4252.625 kb on + strand, within LU632_RS22240 at 4252.625 kb on + strand, within LU632_RS22240 at 4252.626 kb on - strand, within LU632_RS22240 at 4252.626 kb on - strand, within LU632_RS22240
Per-strain Table
Position Strand Gene LocusTag Fraction Experiment:TE2, Cucumber 5 Petiole 1 (TE2-S-C5-P1) remove 4,248,720 + ligB LU632_RS22215 0.88 +0.5 4,248,720 + ligB LU632_RS22215 0.88 -2.6 4,248,720 + ligB LU632_RS22215 0.88 -2.7 4,248,720 + ligB LU632_RS22215 0.88 -0.3 4,248,739 - ligB LU632_RS22215 0.90 -0.7 4,248,820 - +0.2 4,248,935 - LU632_RS22220 0.54 +1.3 4,248,935 - LU632_RS22220 0.54 -0.2 4,248,935 - LU632_RS22220 0.54 -0.1 4,248,990 + +0.7 4,248,991 - +0.2 4,249,012 + +1.0 4,249,068 + +1.1 4,249,069 - +1.0 4,249,226 + LU632_RS22225 0.20 -0.8 4,249,257 + LU632_RS22225 0.30 -0.8 4,249,315 - LU632_RS22225 0.47 +0.3 4,249,424 + LU632_RS22225 0.80 +0.0 4,249,449 - LU632_RS22225 0.87 +0.1 4,249,491 - -0.4 4,249,514 - -1.1 4,249,514 - +2.8 4,249,559 + +0.5 4,249,560 - +2.1 4,249,560 - -0.8 4,249,560 - +0.2 4,249,615 + +0.8 4,249,669 + +0.5 4,249,806 + -0.8 4,249,842 + +1.3 4,249,971 + LU632_RS22230 0.14 -0.4 4,250,002 + LU632_RS22230 0.16 +0.7 4,250,002 + LU632_RS22230 0.16 +2.1 4,250,015 + LU632_RS22230 0.17 -1.6 4,250,016 - LU632_RS22230 0.17 +1.8 4,250,016 - LU632_RS22230 0.17 -2.6 4,250,050 - LU632_RS22230 0.18 -2.0 4,250,160 + LU632_RS22230 0.24 +0.2 4,250,161 - LU632_RS22230 0.24 +2.0 4,250,162 + LU632_RS22230 0.24 +2.4 4,250,162 + LU632_RS22230 0.24 +3.0 4,250,163 - LU632_RS22230 0.24 +0.8 4,250,218 + LU632_RS22230 0.27 +0.4 4,250,251 + LU632_RS22230 0.28 +0.6 4,250,257 - LU632_RS22230 0.29 +0.8 4,250,257 - LU632_RS22230 0.29 +0.2 4,250,417 + LU632_RS22230 0.37 -0.8 4,250,418 - LU632_RS22230 0.37 +1.2 4,250,449 + LU632_RS22230 0.38 +0.5 4,250,450 - LU632_RS22230 0.39 -1.9 4,250,566 - LU632_RS22230 0.44 +0.8 4,250,625 - LU632_RS22230 0.47 -0.7 4,250,625 - LU632_RS22230 0.47 -2.7 4,250,627 + LU632_RS22230 0.47 +2.2 4,250,672 + LU632_RS22230 0.50 +1.2 4,250,672 + LU632_RS22230 0.50 +0.9 4,250,673 - LU632_RS22230 0.50 +1.1 4,250,673 - LU632_RS22230 0.50 +2.3 4,250,695 + LU632_RS22230 0.51 +0.1 4,250,741 + LU632_RS22230 0.53 +2.6 4,250,779 - LU632_RS22230 0.55 +0.1 4,250,794 + LU632_RS22230 0.56 -1.4 4,250,794 + LU632_RS22230 0.56 +1.1 4,250,794 + LU632_RS22230 0.56 +1.8 4,250,795 - LU632_RS22230 0.56 +1.3 4,250,795 - LU632_RS22230 0.56 +4.6 4,250,795 - LU632_RS22230 0.56 +2.4 4,250,795 - LU632_RS22230 0.56 +1.4 4,250,795 - LU632_RS22230 0.56 -0.4 4,250,795 - LU632_RS22230 0.56 +3.1 4,250,795 - LU632_RS22230 0.56 +5.1 4,250,795 - LU632_RS22230 0.56 +7.3 4,250,795 - LU632_RS22230 0.56 +3.2 4,250,943 - LU632_RS22230 0.63 +1.7 4,251,032 - LU632_RS22230 0.68 -0.0 4,251,091 - LU632_RS22230 0.71 +2.4 4,251,210 + LU632_RS22230 0.77 -0.2 4,251,222 + LU632_RS22230 0.78 +0.6 4,251,248 + LU632_RS22230 0.79 +1.9 4,251,249 - LU632_RS22230 0.79 +1.6 4,251,249 - LU632_RS22230 0.79 -0.4 4,251,249 - LU632_RS22230 0.79 +1.8 4,251,253 + LU632_RS22230 0.79 +0.4 4,251,253 + LU632_RS22230 0.79 -0.0 4,251,253 + LU632_RS22230 0.79 -0.8 4,251,254 - LU632_RS22230 0.79 +0.9 4,251,254 - LU632_RS22230 0.79 +2.5 4,251,254 - LU632_RS22230 0.79 +1.2 4,251,254 - LU632_RS22230 0.79 -1.0 4,251,255 + LU632_RS22230 0.79 -0.4 4,251,256 - LU632_RS22230 0.79 +0.6 4,251,351 - LU632_RS22230 0.84 +2.1 4,251,420 + LU632_RS22230 0.88 -2.6 4,251,421 - LU632_RS22230 0.88 +1.2 4,251,426 - LU632_RS22230 0.88 +1.2 4,251,456 - LU632_RS22230 0.89 +1.9 4,251,515 - -2.0 4,251,650 + -1.4 4,251,651 - +1.1 4,251,651 - -1.1 4,251,668 + -0.4 4,251,677 + -1.6 4,251,678 - +1.4 4,251,697 + -0.4 4,251,835 + LU632_RS22235 0.24 -1.0 4,251,836 - LU632_RS22235 0.24 +1.8 4,251,871 - LU632_RS22235 0.29 -2.3 4,251,916 + LU632_RS22235 0.35 -1.1 4,251,916 + LU632_RS22235 0.35 -0.8 4,251,917 - LU632_RS22235 0.35 +2.3 4,251,917 - LU632_RS22235 0.35 +1.2 4,251,917 - LU632_RS22235 0.35 -0.4 4,251,917 - LU632_RS22235 0.35 +1.2 4,251,918 + LU632_RS22235 0.36 -0.3 4,251,918 + LU632_RS22235 0.36 -0.8 4,251,919 - LU632_RS22235 0.36 -0.4 4,251,919 - LU632_RS22235 0.36 -0.8 4,251,919 - LU632_RS22235 0.36 -1.6 4,251,919 - LU632_RS22235 0.36 -2.7 4,251,919 - LU632_RS22235 0.36 -3.1 4,251,919 - LU632_RS22235 0.36 +1.7 4,251,919 - LU632_RS22235 0.36 -0.2 4,251,919 - LU632_RS22235 0.36 +0.4 4,251,919 - LU632_RS22235 0.36 +0.8 4,252,073 - LU632_RS22235 0.58 +0.0 4,252,081 - LU632_RS22235 0.59 +2.3 4,252,133 - LU632_RS22235 0.66 +0.7 4,252,269 + LU632_RS22235 0.86 -0.3 4,252,282 + LU632_RS22235 0.88 -0.6 4,252,283 - LU632_RS22235 0.88 +1.3 4,252,356 + -0.8 4,252,356 + -2.0 4,252,356 + +0.4 4,252,357 - +1.2 4,252,357 - -1.4 4,252,431 + LU632_RS22240 0.21 +1.2 4,252,431 + LU632_RS22240 0.21 -1.6 4,252,539 + LU632_RS22240 0.52 +1.2 4,252,586 + LU632_RS22240 0.65 -1.0 4,252,586 + LU632_RS22240 0.65 -1.1 4,252,587 - LU632_RS22240 0.66 +0.6 4,252,591 + LU632_RS22240 0.67 +0.4 4,252,604 + LU632_RS22240 0.70 +1.2 4,252,605 - LU632_RS22240 0.71 +1.8 4,252,608 - LU632_RS22240 0.72 +0.6 4,252,608 - LU632_RS22240 0.72 +1.3 4,252,611 - LU632_RS22240 0.72 -0.0 4,252,625 + LU632_RS22240 0.76 -0.3 4,252,625 + LU632_RS22240 0.76 -2.0 4,252,626 - LU632_RS22240 0.77 +4.3 4,252,626 - LU632_RS22240 0.77 +0.0
Or see this region's nucleotide sequence