Strain Fitness in Erwinia tracheiphila SCR3 around LU632_RS22200

Experiment: Experiment:TE2, Cucumber 5 Petiole 1 (TE2-S-C5-P1)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Experiment:TE2, Cucumber 5 Petiole 1 (TE2-S-C5-P1)
4,242,948	-	recG	LU632_RS22190	0.89	-0.8
4,243,033	+				-0.4
4,243,034	-				-2.7
4,243,034	-				+0.2
4,243,035	+				+4.2
4,243,035	+				+1.8
4,243,036	-				+0.5
4,243,036	-				-0.8
4,243,036	-				-0.1
4,243,093	+				+0.9
4,243,093	+				+2.2
4,243,094	-				-0.2
4,243,097	+				-2.1
4,243,098	-				-0.1
4,243,370	+	trmH	LU632_RS22195	0.27	-1.7
4,243,370	+	trmH	LU632_RS22195	0.27	+0.3
4,243,370	+	trmH	LU632_RS22195	0.27	-1.6
4,243,374	+	trmH	LU632_RS22195	0.27	+0.1
4,243,415	-	trmH	LU632_RS22195	0.33	-1.5
4,243,467	+	trmH	LU632_RS22195	0.41	-2.3
4,243,551	+	trmH	LU632_RS22195	0.53	-2.3
4,243,554	-	trmH	LU632_RS22195	0.53	+0.4
4,243,624	-	trmH	LU632_RS22195	0.63	-0.4
4,243,663	+	trmH	LU632_RS22195	0.69	-0.2
4,243,788	+	trmH	LU632_RS22195	0.87	+2.4
4,243,886	+				-2.5
4,243,896	+				+0.9
4,243,896	+				+2.9
4,243,943	-				-1.2
4,243,995	-				+0.8
4,244,098	-	spoT	LU632_RS22200	0.10	+0.9
4,244,098	-	spoT	LU632_RS22200	0.10	+1.9
4,244,251	-	spoT	LU632_RS22200	0.17	-0.8
4,244,293	+	spoT	LU632_RS22200	0.19	+1.2
4,244,432	-	spoT	LU632_RS22200	0.26	-1.1
4,245,996	-				+0.9
4,246,020	-				-0.4