Experiment: Experiment:TE2, Cucumber 5 Petiole 1 (TE2-S-C5-P1)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt LU632_RS22160 and dtd overlap by 4 nucleotides dtd and fabY are separated by 56 nucleotides fabY and rluF are separated by 12 nucleotides rluF and LU632_RS22180 are separated by 38 nucleotides
LU632_RS22160: LU632_RS22160 - virulence factor BrkB family protein, at 4,234,535 to 4,235,410
_RS22160
LU632_RS22165: dtd - D-aminoacyl-tRNA deacylase, at 4,235,407 to 4,235,844
dtd
LU632_RS22170: fabY - fatty acid biosynthesis protein FabY, at 4,235,901 to 4,236,839
fabY
LU632_RS22175: rluF - 23S rRNA pseudouridine(2604) synthase RluF, at 4,236,852 to 4,237,718
rluF
LU632_RS22180: LU632_RS22180 - AsmA family protein, at 4,237,757 to 4,239,439
_RS22180
Position (kb) 4235
4236
4237 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2
3
4
5
6 at 4235.126 kb on + strand, within LU632_RS22160 at 4235.127 kb on - strand, within LU632_RS22160 at 4235.197 kb on - strand, within LU632_RS22160 at 4235.229 kb on - strand, within LU632_RS22160 at 4235.229 kb on - strand, within LU632_RS22160 at 4235.249 kb on + strand, within LU632_RS22160 at 4235.250 kb on - strand, within LU632_RS22160 at 4235.261 kb on + strand, within LU632_RS22160 at 4235.261 kb on + strand, within LU632_RS22160 at 4235.261 kb on + strand, within LU632_RS22160 at 4235.271 kb on + strand, within LU632_RS22160 at 4235.317 kb on + strand, within LU632_RS22160 at 4235.317 kb on + strand, within LU632_RS22160 at 4235.325 kb on + strand at 4235.340 kb on + strand at 4235.341 kb on - strand at 4235.411 kb on + strand at 4235.490 kb on + strand, within dtd at 4235.491 kb on - strand, within dtd at 4235.541 kb on - strand, within dtd at 4235.598 kb on + strand, within dtd at 4235.599 kb on - strand, within dtd at 4235.599 kb on - strand, within dtd at 4235.722 kb on + strand, within dtd at 4235.729 kb on - strand, within dtd at 4235.900 kb on + strand at 4235.900 kb on + strand at 4235.904 kb on + strand at 4235.904 kb on + strand at 4235.904 kb on + strand at 4235.946 kb on + strand at 4235.946 kb on + strand at 4235.947 kb on - strand at 4235.976 kb on - strand at 4236.127 kb on + strand, within fabY at 4236.264 kb on + strand, within fabY at 4236.265 kb on - strand, within fabY at 4236.326 kb on + strand, within fabY at 4236.327 kb on - strand, within fabY at 4236.351 kb on - strand, within fabY at 4236.405 kb on - strand, within fabY at 4236.405 kb on - strand, within fabY at 4236.431 kb on - strand, within fabY at 4236.434 kb on + strand, within fabY at 4236.435 kb on - strand, within fabY at 4236.435 kb on - strand, within fabY at 4236.444 kb on + strand, within fabY at 4236.444 kb on + strand, within fabY at 4236.445 kb on - strand, within fabY at 4236.446 kb on + strand, within fabY at 4236.504 kb on - strand, within fabY at 4236.504 kb on - strand, within fabY at 4236.536 kb on + strand, within fabY at 4236.537 kb on - strand, within fabY at 4236.537 kb on - strand, within fabY at 4236.668 kb on - strand, within fabY at 4236.778 kb on + strand at 4236.779 kb on - strand at 4236.780 kb on + strand at 4236.780 kb on + strand at 4236.780 kb on + strand at 4236.780 kb on + strand at 4236.781 kb on - strand at 4236.781 kb on - strand at 4236.781 kb on - strand at 4236.781 kb on - strand at 4236.781 kb on - strand at 4236.781 kb on - strand at 4236.781 kb on - strand at 4236.781 kb on - strand at 4236.781 kb on - strand at 4236.781 kb on - strand at 4236.781 kb on - strand at 4236.781 kb on - strand at 4236.781 kb on - strand at 4236.781 kb on - strand at 4236.782 kb on + strand at 4236.782 kb on + strand at 4236.782 kb on + strand at 4236.782 kb on + strand at 4236.782 kb on + strand at 4236.782 kb on + strand at 4236.782 kb on + strand at 4236.782 kb on + strand at 4236.782 kb on + strand at 4236.782 kb on + strand at 4236.782 kb on + strand at 4236.782 kb on + strand at 4236.782 kb on + strand at 4236.782 kb on + strand at 4236.782 kb on + strand at 4236.783 kb on - strand at 4236.783 kb on - strand at 4236.783 kb on - strand at 4236.783 kb on - strand at 4236.783 kb on - strand at 4236.783 kb on - strand at 4236.815 kb on - strand at 4236.835 kb on + strand at 4236.835 kb on + strand at 4237.094 kb on + strand, within rluF at 4237.095 kb on - strand, within rluF at 4237.095 kb on - strand, within rluF at 4237.245 kb on - strand, within rluF at 4237.309 kb on + strand, within rluF at 4237.310 kb on - strand, within rluF at 4237.346 kb on + strand, within rluF at 4237.346 kb on + strand, within rluF at 4237.347 kb on - strand, within rluF at 4237.347 kb on - strand, within rluF at 4237.351 kb on - strand, within rluF at 4237.353 kb on + strand, within rluF at 4237.397 kb on + strand, within rluF at 4237.448 kb on + strand, within rluF at 4237.509 kb on + strand, within rluF at 4237.511 kb on + strand, within rluF at 4237.511 kb on + strand, within rluF at 4237.511 kb on + strand, within rluF at 4237.511 kb on + strand, within rluF at 4237.512 kb on - strand, within rluF at 4237.512 kb on - strand, within rluF at 4237.640 kb on - strand at 4237.684 kb on + strand at 4237.684 kb on + strand at 4237.684 kb on + strand at 4237.685 kb on - strand at 4237.685 kb on - strand at 4237.685 kb on - strand at 4237.685 kb on - strand at 4237.744 kb on + strand at 4237.745 kb on - strand at 4237.745 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Experiment:TE2, Cucumber 5 Petiole 1 (TE2-S-C5-P1) remove 4,235,126 + LU632_RS22160 0.67 -1.6 4,235,127 - LU632_RS22160 0.68 -1.6 4,235,197 - LU632_RS22160 0.76 +0.2 4,235,229 - LU632_RS22160 0.79 -2.8 4,235,229 - LU632_RS22160 0.79 +1.4 4,235,249 + LU632_RS22160 0.82 +1.0 4,235,250 - LU632_RS22160 0.82 -0.9 4,235,261 + LU632_RS22160 0.83 +1.8 4,235,261 + LU632_RS22160 0.83 -0.1 4,235,261 + LU632_RS22160 0.83 -1.6 4,235,271 + LU632_RS22160 0.84 +2.2 4,235,317 + LU632_RS22160 0.89 -1.1 4,235,317 + LU632_RS22160 0.89 +6.2 4,235,325 + +1.9 4,235,340 + +1.2 4,235,341 - +0.6 4,235,411 + +0.9 4,235,490 + dtd LU632_RS22165 0.19 -1.4 4,235,491 - dtd LU632_RS22165 0.19 +0.5 4,235,541 - dtd LU632_RS22165 0.31 +1.5 4,235,598 + dtd LU632_RS22165 0.44 -0.1 4,235,599 - dtd LU632_RS22165 0.44 +1.1 4,235,599 - dtd LU632_RS22165 0.44 -0.0 4,235,722 + dtd LU632_RS22165 0.72 +0.6 4,235,729 - dtd LU632_RS22165 0.74 -0.5 4,235,900 + +1.4 4,235,900 + +3.0 4,235,904 + +2.8 4,235,904 + +1.3 4,235,904 + +2.4 4,235,946 + -0.2 4,235,946 + -0.1 4,235,947 - +2.8 4,235,976 - +1.9 4,236,127 + fabY LU632_RS22170 0.24 -0.0 4,236,264 + fabY LU632_RS22170 0.39 +2.9 4,236,265 - fabY LU632_RS22170 0.39 +2.1 4,236,326 + fabY LU632_RS22170 0.45 +1.4 4,236,327 - fabY LU632_RS22170 0.45 +1.9 4,236,351 - fabY LU632_RS22170 0.48 +1.0 4,236,405 - fabY LU632_RS22170 0.54 +3.1 4,236,405 - fabY LU632_RS22170 0.54 +2.8 4,236,431 - fabY LU632_RS22170 0.56 +1.8 4,236,434 + fabY LU632_RS22170 0.57 +1.9 4,236,435 - fabY LU632_RS22170 0.57 +1.4 4,236,435 - fabY LU632_RS22170 0.57 +0.9 4,236,444 + fabY LU632_RS22170 0.58 +2.7 4,236,444 + fabY LU632_RS22170 0.58 +2.8 4,236,445 - fabY LU632_RS22170 0.58 +0.6 4,236,446 + fabY LU632_RS22170 0.58 +1.8 4,236,504 - fabY LU632_RS22170 0.64 +5.5 4,236,504 - fabY LU632_RS22170 0.64 -1.8 4,236,536 + fabY LU632_RS22170 0.68 +0.9 4,236,537 - fabY LU632_RS22170 0.68 -1.4 4,236,537 - fabY LU632_RS22170 0.68 +2.9 4,236,668 - fabY LU632_RS22170 0.82 -0.7 4,236,778 + +1.3 4,236,779 - +1.7 4,236,780 + +3.1 4,236,780 + +0.9 4,236,780 + +3.5 4,236,780 + +2.3 4,236,781 - +1.9 4,236,781 - +0.3 4,236,781 - +3.6 4,236,781 - +0.8 4,236,781 - +1.9 4,236,781 - +4.1 4,236,781 - +1.2 4,236,781 - +1.2 4,236,781 - +0.9 4,236,781 - +2.2 4,236,781 - +0.9 4,236,781 - +3.6 4,236,781 - -1.6 4,236,781 - -0.4 4,236,782 + +3.8 4,236,782 + +1.9 4,236,782 + +1.2 4,236,782 + +1.0 4,236,782 + -1.3 4,236,782 + -0.4 4,236,782 + +0.2 4,236,782 + -1.0 4,236,782 + +1.9 4,236,782 + +1.2 4,236,782 + +1.9 4,236,782 + -0.7 4,236,782 + +2.1 4,236,782 + +2.4 4,236,782 + +1.9 4,236,783 - +1.5 4,236,783 - +1.9 4,236,783 - -0.4 4,236,783 - -0.4 4,236,783 - +0.2 4,236,783 - +2.5 4,236,815 - +0.9 4,236,835 + +1.1 4,236,835 + -1.9 4,237,094 + rluF LU632_RS22175 0.28 +1.0 4,237,095 - rluF LU632_RS22175 0.28 +0.3 4,237,095 - rluF LU632_RS22175 0.28 -1.5 4,237,245 - rluF LU632_RS22175 0.45 +5.4 4,237,309 + rluF LU632_RS22175 0.53 +1.0 4,237,310 - rluF LU632_RS22175 0.53 +0.2 4,237,346 + rluF LU632_RS22175 0.57 +2.2 4,237,346 + rluF LU632_RS22175 0.57 -0.2 4,237,347 - rluF LU632_RS22175 0.57 -1.0 4,237,347 - rluF LU632_RS22175 0.57 -0.9 4,237,351 - rluF LU632_RS22175 0.58 +0.0 4,237,353 + rluF LU632_RS22175 0.58 +0.7 4,237,397 + rluF LU632_RS22175 0.63 -2.1 4,237,448 + rluF LU632_RS22175 0.69 +0.5 4,237,509 + rluF LU632_RS22175 0.76 +3.2 4,237,511 + rluF LU632_RS22175 0.76 -2.4 4,237,511 + rluF LU632_RS22175 0.76 -1.0 4,237,511 + rluF LU632_RS22175 0.76 +0.2 4,237,511 + rluF LU632_RS22175 0.76 +0.0 4,237,512 - rluF LU632_RS22175 0.76 +1.5 4,237,512 - rluF LU632_RS22175 0.76 +1.5 4,237,640 - +0.8 4,237,684 + -2.4 4,237,684 + -0.8 4,237,684 + -3.8 4,237,685 - -1.4 4,237,685 - +2.2 4,237,685 - +1.2 4,237,685 - -0.5 4,237,744 + -0.4 4,237,745 - +0.8 4,237,745 - -0.9
Or see this region's nucleotide sequence