Strain Fitness in Erwinia tracheiphila SCR3 around LU632_RS22155

Experiment: Experiment:TE2, Cucumber 5 Petiole 1 (TE2-S-C5-P1)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Experiment:TE2, Cucumber 5 Petiole 1 (TE2-S-C5-P1)
4,233,068	+	typA	LU632_RS22150	0.61	+0.2
4,233,358	+	typA	LU632_RS22150	0.76	-0.8
4,233,531	+	typA	LU632_RS22150	0.86	-2.7
4,233,538	-	typA	LU632_RS22150	0.86	-1.4
4,233,796	+				+0.3
4,233,796	+				+0.9
4,233,797	-				-0.1
4,233,797	-				-0.4
4,233,892	-				+1.8
4,233,945	+				-1.7
4,233,945	+				+0.4
4,233,945	+				-1.4
4,233,947	+				+0.6
4,233,947	+				+0.8
4,233,948	-				+1.3
4,233,958	+				-1.6
4,233,978	-				-0.6
4,233,978	-				+1.0
4,234,046	+	yihX	LU632_RS22155	0.18	+2.2
4,234,094	+	yihX	LU632_RS22155	0.26	+0.9
4,234,095	-	yihX	LU632_RS22155	0.26	+1.8
4,234,251	-	yihX	LU632_RS22155	0.52	+0.8
4,234,309	+	yihX	LU632_RS22155	0.62	+0.5
4,234,333	-	yihX	LU632_RS22155	0.66	+2.5
4,234,333	-	yihX	LU632_RS22155	0.66	-0.8
4,234,448	+	yihX	LU632_RS22155	0.85	-0.8
4,234,612	+				+1.8
4,234,613	-				+1.2
4,234,613	-				+1.5
4,234,630	+		LU632_RS22160	0.11	+3.8
4,234,800	-		LU632_RS22160	0.30	-0.6
4,234,883	+		LU632_RS22160	0.40	+0.2
4,234,884	-		LU632_RS22160	0.40	+1.0
4,234,884	-		LU632_RS22160	0.40	+2.2
4,235,126	+		LU632_RS22160	0.67	-1.6
4,235,127	-		LU632_RS22160	0.68	-1.6
4,235,197	-		LU632_RS22160	0.76	+0.2
4,235,229	-		LU632_RS22160	0.79	-2.8
4,235,229	-		LU632_RS22160	0.79	+1.4
4,235,249	+		LU632_RS22160	0.82	+1.0
4,235,250	-		LU632_RS22160	0.82	-0.9
4,235,261	+		LU632_RS22160	0.83	+1.8
4,235,261	+		LU632_RS22160	0.83	-0.1
4,235,261	+		LU632_RS22160	0.83	-1.6
4,235,271	+		LU632_RS22160	0.84	+2.2
4,235,317	+		LU632_RS22160	0.89	-1.1
4,235,317	+		LU632_RS22160	0.89	+6.2
4,235,325	+				+1.9
4,235,340	+				+1.2
4,235,341	-				+0.6
4,235,411	+				+0.9
4,235,490	+	dtd	LU632_RS22165	0.19	-1.4
4,235,491	-	dtd	LU632_RS22165	0.19	+0.5