Strain Fitness in Erwinia tracheiphila SCR3 around LU632_RS21930

Experiment: Experiment:TE2, Cucumber 5 Petiole 1 (TE2-S-C5-P1)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Experiment:TE2, Cucumber 5 Petiole 1 (TE2-S-C5-P1)
4,188,007	+				-1.6
4,188,349	-	rfaC	LU632_RS21925	0.39	+1.2
4,188,395	+	rfaC	LU632_RS21925	0.44	-1.1
4,188,524	+	rfaC	LU632_RS21925	0.57	+1.2
4,188,524	+	rfaC	LU632_RS21925	0.57	-1.4
4,188,610	+	rfaC	LU632_RS21925	0.66	+1.2
4,188,610	+	rfaC	LU632_RS21925	0.66	-0.8
4,188,939	+				+0.1
4,188,999	+				-1.5
4,189,000	-				-2.0
4,189,011	-				-1.6
4,189,023	-				+0.7
4,189,023	-				-2.0
4,189,070	+		LU632_RS21930	0.13	-1.4
4,189,070	+		LU632_RS21930	0.13	-1.7
4,189,116	+		LU632_RS21930	0.18	-1.4
4,189,116	+		LU632_RS21930	0.18	+0.2
4,189,116	+		LU632_RS21930	0.18	-2.5
4,189,116	+		LU632_RS21930	0.18	-1.3
4,189,117	-		LU632_RS21930	0.18	-2.1
4,189,117	-		LU632_RS21930	0.18	-3.9
4,189,117	-		LU632_RS21930	0.18	+1.2
4,189,181	+		LU632_RS21930	0.25	+1.2
4,189,181	+		LU632_RS21930	0.25	-1.2
4,189,181	+		LU632_RS21930	0.25	-1.0
4,189,186	-		LU632_RS21930	0.26	-0.8
4,189,212	+		LU632_RS21930	0.29	+0.2
4,189,213	-		LU632_RS21930	0.29	-2.4
4,189,213	-		LU632_RS21930	0.29	-1.6
4,189,213	-		LU632_RS21930	0.29	-1.4
4,189,550	+		LU632_RS21930	0.66	-3.1
4,189,550	+		LU632_RS21930	0.66	-0.4
4,189,550	+		LU632_RS21930	0.66	-2.1
4,189,551	-		LU632_RS21930	0.66	-2.5
4,189,551	-		LU632_RS21930	0.66	-2.6
4,189,572	+		LU632_RS21930	0.68	+1.0
4,189,663	+		LU632_RS21930	0.78	-1.7
4,189,760	-		LU632_RS21930	0.88	+1.2
4,189,827	-				-2.7
4,189,827	-				-3.1
4,189,827	-				-3.1
4,189,846	+				+0.0
4,189,850	+				+1.4
4,189,850	+				-1.6
4,189,864	-				-0.1
4,189,919	+				+1.3
4,189,938	-				-0.8
4,189,948	+				+0.0
4,189,949	-				-0.8
4,189,991	+				-3.1
4,189,992	-				+0.0
4,190,024	+		LU632_RS21935	0.12	-1.0
4,190,025	-		LU632_RS21935	0.12	+1.9
4,190,036	+		LU632_RS21935	0.13	-0.3
4,190,098	+		LU632_RS21935	0.19	-1.3
4,190,098	+		LU632_RS21935	0.19	+2.3
4,190,098	+		LU632_RS21935	0.19	-0.0
4,190,099	-		LU632_RS21935	0.20	+1.9
4,190,154	-		LU632_RS21935	0.25	+0.4
4,190,215	+		LU632_RS21935	0.31	-1.8
4,190,215	+		LU632_RS21935	0.31	-2.1
4,190,216	-		LU632_RS21935	0.31	+1.2
4,190,216	-		LU632_RS21935	0.31	-3.4
4,190,261	+		LU632_RS21935	0.36	+1.4
4,190,458	+		LU632_RS21935	0.56	+1.1
4,190,458	+		LU632_RS21935	0.56	+1.2
4,190,461	+		LU632_RS21935	0.57	+1.4
4,190,461	+		LU632_RS21935	0.57	+2.4
4,190,461	+		LU632_RS21935	0.57	+0.5
4,190,462	-		LU632_RS21935	0.57	-0.8
4,190,462	-		LU632_RS21935	0.57	+3.0
4,190,468	+		LU632_RS21935	0.57	+4.5
4,190,538	-		LU632_RS21935	0.64	+2.7
4,190,556	+		LU632_RS21935	0.66	+3.5
4,190,585	-		LU632_RS21935	0.69	-0.5
4,190,704	+		LU632_RS21935	0.81	-1.9
4,190,704	+		LU632_RS21935	0.81	-0.2
4,190,705	-		LU632_RS21935	0.81	+0.5
4,190,729	-		LU632_RS21935	0.84	+0.2
4,190,861	+				-0.5
4,190,862	-				+0.5