Experiment: Experiment:TE2, Cucumber 5 Petiole 1 (TE2-S-C5-P1)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt LU632_RS21735 and LU632_RS21740 are separated by 5 nucleotides LU632_RS21740 and rlmB are separated by 8 nucleotides rlmB and rnr are separated by 15 nucleotides rnr and LU632_RS21755 are separated by 531 nucleotides
LU632_RS21735: LU632_RS21735 - Cache 3/Cache 2 fusion domain-containing protein, at 4,155,094 to 4,155,672
_RS21735
LU632_RS21740: LU632_RS21740 - hypothetical protein, at 4,155,678 to 4,155,872
_RS21740
LU632_RS21745: rlmB - 23S rRNA (guanosine(2251)-2'-O)-methyltransferase RlmB, at 4,155,881 to 4,156,615
rlmB
LU632_RS21750: rnr - ribonuclease R, at 4,156,631 to 4,159,087
rnr
LU632_RS21755: LU632_RS21755 - adenylosuccinate synthase, at 4,159,619 to 4,160,917
_RS21755
Position (kb) 4156
4157
4158
4159
4160 Strain fitness (log2 ratio) -5
-4
-3
-2
-1
0
1
2
3
4
5
6 at 4155.666 kb on - strand at 4155.700 kb on + strand, within LU632_RS21740 at 4155.917 kb on + strand at 4155.918 kb on - strand at 4155.970 kb on + strand, within rlmB at 4155.970 kb on + strand, within rlmB at 4155.971 kb on - strand, within rlmB at 4155.971 kb on - strand, within rlmB at 4156.068 kb on + strand, within rlmB at 4156.069 kb on - strand, within rlmB at 4156.273 kb on + strand, within rlmB at 4156.537 kb on + strand, within rlmB at 4156.542 kb on - strand at 4156.651 kb on + strand at 4156.736 kb on - strand at 4156.810 kb on + strand at 4156.942 kb on + strand, within rnr at 4157.043 kb on + strand, within rnr at 4157.043 kb on + strand, within rnr at 4157.274 kb on + strand, within rnr at 4157.337 kb on + strand, within rnr at 4157.389 kb on + strand, within rnr at 4157.400 kb on + strand, within rnr at 4157.446 kb on - strand, within rnr at 4157.520 kb on - strand, within rnr at 4157.701 kb on + strand, within rnr at 4157.701 kb on + strand, within rnr at 4157.702 kb on - strand, within rnr at 4157.702 kb on - strand, within rnr at 4157.702 kb on - strand, within rnr at 4157.848 kb on - strand, within rnr at 4157.940 kb on + strand, within rnr at 4157.940 kb on + strand, within rnr at 4157.941 kb on + strand, within rnr at 4157.941 kb on - strand, within rnr at 4157.976 kb on + strand, within rnr at 4157.976 kb on + strand, within rnr at 4157.977 kb on - strand, within rnr at 4157.977 kb on - strand, within rnr at 4157.984 kb on - strand, within rnr at 4157.986 kb on - strand, within rnr at 4158.031 kb on + strand, within rnr at 4158.031 kb on + strand, within rnr at 4158.031 kb on + strand, within rnr at 4158.032 kb on - strand, within rnr at 4158.032 kb on - strand, within rnr at 4158.032 kb on - strand, within rnr at 4158.174 kb on + strand, within rnr at 4158.174 kb on + strand, within rnr at 4158.175 kb on - strand, within rnr at 4158.177 kb on + strand, within rnr at 4158.178 kb on - strand, within rnr at 4158.240 kb on - strand, within rnr at 4158.344 kb on + strand, within rnr at 4158.366 kb on - strand, within rnr at 4158.437 kb on - strand, within rnr at 4158.666 kb on - strand, within rnr at 4158.689 kb on - strand, within rnr at 4158.719 kb on - strand, within rnr at 4158.762 kb on + strand, within rnr at 4159.087 kb on + strand at 4159.087 kb on + strand at 4159.088 kb on - strand at 4159.156 kb on + strand at 4159.157 kb on - strand at 4159.267 kb on + strand at 4159.268 kb on - strand at 4159.279 kb on + strand at 4159.279 kb on + strand at 4159.279 kb on + strand at 4159.280 kb on - strand at 4159.280 kb on - strand at 4159.373 kb on + strand at 4159.378 kb on + strand at 4159.378 kb on + strand at 4159.379 kb on - strand at 4159.410 kb on - strand at 4159.438 kb on + strand at 4159.492 kb on + strand at 4159.495 kb on - strand at 4159.495 kb on - strand at 4159.533 kb on + strand at 4159.537 kb on + strand at 4159.537 kb on + strand at 4159.679 kb on - strand at 4159.720 kb on + strand at 4159.721 kb on - strand at 4159.722 kb on + strand at 4159.800 kb on + strand, within LU632_RS21755 at 4159.801 kb on - strand, within LU632_RS21755 at 4159.814 kb on - strand, within LU632_RS21755 at 4159.951 kb on + strand, within LU632_RS21755
Per-strain Table
Position Strand Gene LocusTag Fraction Experiment:TE2, Cucumber 5 Petiole 1 (TE2-S-C5-P1) remove 4,155,666 - +0.9 4,155,700 + LU632_RS21740 0.11 +2.1 4,155,917 + +0.0 4,155,918 - -0.4 4,155,970 + rlmB LU632_RS21745 0.12 +0.2 4,155,970 + rlmB LU632_RS21745 0.12 +1.0 4,155,971 - rlmB LU632_RS21745 0.12 -1.6 4,155,971 - rlmB LU632_RS21745 0.12 -0.0 4,156,068 + rlmB LU632_RS21745 0.25 -3.5 4,156,069 - rlmB LU632_RS21745 0.26 +0.8 4,156,273 + rlmB LU632_RS21745 0.53 +0.2 4,156,537 + rlmB LU632_RS21745 0.89 -1.9 4,156,542 - +0.1 4,156,651 + -1.8 4,156,736 - +2.2 4,156,810 + +2.2 4,156,942 + rnr LU632_RS21750 0.13 -2.1 4,157,043 + rnr LU632_RS21750 0.17 +1.1 4,157,043 + rnr LU632_RS21750 0.17 -2.0 4,157,274 + rnr LU632_RS21750 0.26 +2.1 4,157,337 + rnr LU632_RS21750 0.29 -0.3 4,157,389 + rnr LU632_RS21750 0.31 +0.1 4,157,400 + rnr LU632_RS21750 0.31 +0.3 4,157,446 - rnr LU632_RS21750 0.33 +1.9 4,157,520 - rnr LU632_RS21750 0.36 -2.0 4,157,701 + rnr LU632_RS21750 0.44 +0.8 4,157,701 + rnr LU632_RS21750 0.44 -0.2 4,157,702 - rnr LU632_RS21750 0.44 +0.5 4,157,702 - rnr LU632_RS21750 0.44 +4.4 4,157,702 - rnr LU632_RS21750 0.44 +0.6 4,157,848 - rnr LU632_RS21750 0.50 +1.5 4,157,940 + rnr LU632_RS21750 0.53 -0.0 4,157,940 + rnr LU632_RS21750 0.53 +2.1 4,157,941 + rnr LU632_RS21750 0.53 +6.1 4,157,941 - rnr LU632_RS21750 0.53 +1.2 4,157,976 + rnr LU632_RS21750 0.55 +1.0 4,157,976 + rnr LU632_RS21750 0.55 +1.2 4,157,977 - rnr LU632_RS21750 0.55 +2.4 4,157,977 - rnr LU632_RS21750 0.55 +0.7 4,157,984 - rnr LU632_RS21750 0.55 +6.6 4,157,986 - rnr LU632_RS21750 0.55 +2.4 4,158,031 + rnr LU632_RS21750 0.57 +0.4 4,158,031 + rnr LU632_RS21750 0.57 +1.2 4,158,031 + rnr LU632_RS21750 0.57 -0.3 4,158,032 - rnr LU632_RS21750 0.57 +2.2 4,158,032 - rnr LU632_RS21750 0.57 +1.2 4,158,032 - rnr LU632_RS21750 0.57 +0.5 4,158,174 + rnr LU632_RS21750 0.63 +1.5 4,158,174 + rnr LU632_RS21750 0.63 -1.1 4,158,175 - rnr LU632_RS21750 0.63 +1.0 4,158,177 + rnr LU632_RS21750 0.63 +3.0 4,158,178 - rnr LU632_RS21750 0.63 -1.1 4,158,240 - rnr LU632_RS21750 0.65 +0.2 4,158,344 + rnr LU632_RS21750 0.70 -0.4 4,158,366 - rnr LU632_RS21750 0.71 +0.2 4,158,437 - rnr LU632_RS21750 0.74 +1.8 4,158,666 - rnr LU632_RS21750 0.83 -0.8 4,158,689 - rnr LU632_RS21750 0.84 +3.6 4,158,719 - rnr LU632_RS21750 0.85 +2.8 4,158,762 + rnr LU632_RS21750 0.87 +0.3 4,159,087 + -2.3 4,159,087 + +1.4 4,159,088 - +2.0 4,159,156 + +1.8 4,159,157 - +0.9 4,159,267 + +1.7 4,159,268 - -0.8 4,159,279 + +0.4 4,159,279 + -1.4 4,159,279 + +1.9 4,159,280 - -0.7 4,159,280 - +0.6 4,159,373 + +2.0 4,159,378 + +0.2 4,159,378 + -1.1 4,159,379 - +0.4 4,159,410 - +1.2 4,159,438 + -2.1 4,159,492 + -3.5 4,159,495 - +0.2 4,159,495 - -0.0 4,159,533 + +0.6 4,159,537 + +0.0 4,159,537 + +2.1 4,159,679 - -0.8 4,159,720 + -1.8 4,159,721 - -2.6 4,159,722 + -4.9 4,159,800 + LU632_RS21755 0.14 -0.8 4,159,801 - LU632_RS21755 0.14 -2.1 4,159,814 - LU632_RS21755 0.15 -3.3 4,159,951 + LU632_RS21755 0.26 -3.2
Or see this region's nucleotide sequence