Strain Fitness in Erwinia tracheiphila SCR3 around LU632_RS21740

Experiment: Experiment:TE2, Cucumber 5 Petiole 1 (TE2-S-C5-P1)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Experiment:TE2, Cucumber 5 Petiole 1 (TE2-S-C5-P1)
4,154,685	+				+0.6
4,154,685	+				+0.0
4,154,685	+				-2.2
4,154,686	-				-1.4
4,154,686	-				-0.6
4,154,686	-				-1.1
4,154,697	+				+2.9
4,154,697	+				+1.5
4,154,698	-				-1.6
4,154,753	+				+0.8
4,154,753	+				-0.4
4,154,768	+				-0.1
4,154,839	+				-0.8
4,154,840	-				-0.7
4,154,845	+				+0.5
4,154,846	-				-2.1
4,154,899	+				-2.2
4,154,899	+				+0.7
4,154,899	+				-0.5
4,154,899	+				-0.8
4,154,899	+				-1.8
4,154,900	-				+0.1
4,154,900	-				+2.6
4,154,904	+				+1.7
4,154,904	+				+0.6
4,154,905	-				+0.4
4,154,921	-				-0.2
4,154,921	-				-0.8
4,154,924	+				+2.4
4,154,971	+				-3.5
4,154,972	-				+3.3
4,154,972	-				+0.4
4,154,991	+				+2.2
4,155,101	+				+0.2
4,155,121	-				-0.9
4,155,141	-				+0.1
4,155,145	-				+1.2
4,155,232	-		LU632_RS21735	0.24	-1.3
4,155,243	+		LU632_RS21735	0.26	+1.5
4,155,245	+		LU632_RS21735	0.26	-0.5
4,155,246	-		LU632_RS21735	0.26	+2.4
4,155,246	-		LU632_RS21735	0.26	-0.5
4,155,286	-		LU632_RS21735	0.33	-0.0
4,155,319	-		LU632_RS21735	0.39	-0.5
4,155,319	-		LU632_RS21735	0.39	-1.3
4,155,507	+		LU632_RS21735	0.71	-0.5
4,155,507	+		LU632_RS21735	0.71	+0.2
4,155,511	-		LU632_RS21735	0.72	-0.8
4,155,543	+		LU632_RS21735	0.78	+2.2
4,155,666	-				+0.9
4,155,700	+		LU632_RS21740	0.11	+2.1
4,155,917	+				+0.0
4,155,918	-				-0.4
4,155,970	+	rlmB	LU632_RS21745	0.12	+0.2
4,155,970	+	rlmB	LU632_RS21745	0.12	+1.0
4,155,971	-	rlmB	LU632_RS21745	0.12	-1.6
4,155,971	-	rlmB	LU632_RS21745	0.12	-0.0
4,156,068	+	rlmB	LU632_RS21745	0.25	-3.5
4,156,069	-	rlmB	LU632_RS21745	0.26	+0.8
4,156,273	+	rlmB	LU632_RS21745	0.53	+0.2
4,156,537	+	rlmB	LU632_RS21745	0.89	-1.9
4,156,542	-				+0.1
4,156,651	+				-1.8
4,156,736	-				+2.2
4,156,810	+				+2.2