Experiment: Experiment:TE2, Cucumber 5 Petiole 1 (TE2-S-C5-P1)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt fucO and LU632_RS21640 are separated by 237 nucleotides LU632_RS21640 and LU632_RS21645 overlap by 82 nucleotides LU632_RS21645 and LU632_RS21650 are separated by 92 nucleotides LU632_RS21650 and LU632_RS21655 overlap by 14 nucleotides
LU632_RS21635: fucO - lactaldehyde reductase, at 4,137,205 to 4,138,356
fucO
LU632_RS21640: LU632_RS21640 - IS1 family transposase, at 4,138,594 to 4,139,097
_RS21640
LU632_RS21645: LU632_RS21645 - transposase, at 4,139,016 to 4,139,291
_RS21645
LU632_RS21650: LU632_RS21650 - hypothetical protein, at 4,139,384 to 4,139,737
_RS21650
LU632_RS21655: LU632_RS21655 - pesticin C-terminus-like muramidase, at 4,139,724 to 4,140,371
_RS21655
Position (kb) 4138
4139
4140 Strain fitness (log2 ratio) -2
-1
0
1
2
3
4 at 4137.617 kb on + strand, within fucO at 4137.617 kb on + strand, within fucO at 4137.617 kb on + strand, within fucO at 4137.617 kb on + strand, within fucO at 4137.618 kb on - strand, within fucO at 4137.618 kb on - strand, within fucO at 4137.649 kb on - strand, within fucO at 4137.709 kb on + strand, within fucO at 4137.744 kb on + strand, within fucO at 4137.744 kb on + strand, within fucO at 4137.746 kb on + strand, within fucO at 4137.746 kb on + strand, within fucO at 4137.746 kb on + strand, within fucO at 4137.746 kb on + strand, within fucO at 4137.747 kb on - strand, within fucO at 4137.747 kb on - strand, within fucO at 4137.747 kb on - strand, within fucO at 4137.905 kb on + strand, within fucO at 4138.026 kb on + strand, within fucO at 4138.027 kb on - strand, within fucO at 4138.027 kb on - strand, within fucO at 4138.027 kb on - strand, within fucO at 4138.029 kb on + strand, within fucO at 4138.108 kb on - strand, within fucO at 4138.437 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Experiment:TE2, Cucumber 5 Petiole 1 (TE2-S-C5-P1) remove 4,137,617 + fucO LU632_RS21635 0.36 +0.9 4,137,617 + fucO LU632_RS21635 0.36 +0.6 4,137,617 + fucO LU632_RS21635 0.36 +1.8 4,137,617 + fucO LU632_RS21635 0.36 +1.5 4,137,618 - fucO LU632_RS21635 0.36 +1.8 4,137,618 - fucO LU632_RS21635 0.36 +0.2 4,137,649 - fucO LU632_RS21635 0.39 +0.3 4,137,709 + fucO LU632_RS21635 0.44 -0.1 4,137,744 + fucO LU632_RS21635 0.47 -2.1 4,137,744 + fucO LU632_RS21635 0.47 +0.1 4,137,746 + fucO LU632_RS21635 0.47 -0.6 4,137,746 + fucO LU632_RS21635 0.47 +1.9 4,137,746 + fucO LU632_RS21635 0.47 -0.7 4,137,746 + fucO LU632_RS21635 0.47 -0.6 4,137,747 - fucO LU632_RS21635 0.47 +4.3 4,137,747 - fucO LU632_RS21635 0.47 -0.0 4,137,747 - fucO LU632_RS21635 0.47 -2.0 4,137,905 + fucO LU632_RS21635 0.61 -1.6 4,138,026 + fucO LU632_RS21635 0.71 +0.3 4,138,027 - fucO LU632_RS21635 0.71 -1.5 4,138,027 - fucO LU632_RS21635 0.71 -1.1 4,138,027 - fucO LU632_RS21635 0.71 +1.8 4,138,029 + fucO LU632_RS21635 0.72 +1.9 4,138,108 - fucO LU632_RS21635 0.78 -1.1 4,138,437 + +1.7
Or see this region's nucleotide sequence