Experiment: Experiment:TE2, Cucumber 5 Petiole 1 (TE2-S-C5-P1)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt dusB and fis overlap by 19 nucleotides fis and LU632_RS21520 are separated by 158 nucleotides
LU632_RS21510: dusB - tRNA dihydrouridine synthase DusB, at 4,115,016 to 4,116,024
dusB
LU632_RS21515: fis - DNA-binding transcriptional regulator Fis, at 4,116,006 to 4,116,302
fis
LU632_RS21520: LU632_RS21520 - IS91 family transposase, at 4,116,461 to 4,117,684
_RS21520
Position (kb) 4116
4117 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3
4
5
6 at 4115.023 kb on + strand at 4115.120 kb on + strand, within dusB at 4115.120 kb on + strand, within dusB at 4115.121 kb on - strand, within dusB at 4115.270 kb on + strand, within dusB at 4115.271 kb on - strand, within dusB at 4115.322 kb on - strand, within dusB at 4115.337 kb on - strand, within dusB at 4115.452 kb on + strand, within dusB at 4115.452 kb on + strand, within dusB at 4115.452 kb on + strand, within dusB at 4115.452 kb on + strand, within dusB at 4115.452 kb on + strand, within dusB at 4115.452 kb on + strand, within dusB at 4115.452 kb on + strand, within dusB at 4115.453 kb on - strand, within dusB at 4115.462 kb on + strand, within dusB at 4115.470 kb on + strand, within dusB at 4115.475 kb on - strand, within dusB at 4115.528 kb on + strand, within dusB at 4115.529 kb on - strand, within dusB at 4115.659 kb on - strand, within dusB at 4115.780 kb on + strand, within dusB at 4115.780 kb on + strand, within dusB at 4115.800 kb on - strand, within dusB at 4115.803 kb on + strand, within dusB at 4115.823 kb on + strand, within dusB at 4115.872 kb on - strand, within dusB at 4115.961 kb on + strand at 4115.961 kb on + strand at 4115.962 kb on - strand at 4116.006 kb on - strand at 4116.006 kb on - strand at 4116.006 kb on - strand at 4116.022 kb on + strand at 4116.035 kb on - strand at 4116.054 kb on - strand, within fis at 4116.117 kb on + strand, within fis at 4116.131 kb on - strand, within fis at 4116.131 kb on - strand, within fis at 4116.156 kb on + strand, within fis at 4116.157 kb on - strand, within fis at 4116.157 kb on - strand, within fis at 4116.157 kb on - strand, within fis at 4116.197 kb on + strand, within fis at 4116.210 kb on + strand, within fis at 4116.212 kb on + strand, within fis at 4116.212 kb on + strand, within fis at 4116.212 kb on + strand, within fis
Per-strain Table
Position Strand Gene LocusTag Fraction Experiment:TE2, Cucumber 5 Petiole 1 (TE2-S-C5-P1) remove 4,115,023 + +3.0 4,115,120 + dusB LU632_RS21510 0.10 +1.9 4,115,120 + dusB LU632_RS21510 0.10 +2.5 4,115,121 - dusB LU632_RS21510 0.10 +3.7 4,115,270 + dusB LU632_RS21510 0.25 -1.6 4,115,271 - dusB LU632_RS21510 0.25 +3.9 4,115,322 - dusB LU632_RS21510 0.30 +2.6 4,115,337 - dusB LU632_RS21510 0.32 +1.4 4,115,452 + dusB LU632_RS21510 0.43 +1.5 4,115,452 + dusB LU632_RS21510 0.43 +1.3 4,115,452 + dusB LU632_RS21510 0.43 +0.2 4,115,452 + dusB LU632_RS21510 0.43 +3.2 4,115,452 + dusB LU632_RS21510 0.43 +0.9 4,115,452 + dusB LU632_RS21510 0.43 +2.1 4,115,452 + dusB LU632_RS21510 0.43 +2.5 4,115,453 - dusB LU632_RS21510 0.43 +1.7 4,115,462 + dusB LU632_RS21510 0.44 +0.7 4,115,470 + dusB LU632_RS21510 0.45 -0.4 4,115,475 - dusB LU632_RS21510 0.45 +4.9 4,115,528 + dusB LU632_RS21510 0.51 +4.6 4,115,529 - dusB LU632_RS21510 0.51 +1.2 4,115,659 - dusB LU632_RS21510 0.64 -3.1 4,115,780 + dusB LU632_RS21510 0.76 -0.8 4,115,780 + dusB LU632_RS21510 0.76 +1.5 4,115,800 - dusB LU632_RS21510 0.78 +4.6 4,115,803 + dusB LU632_RS21510 0.78 +2.2 4,115,823 + dusB LU632_RS21510 0.80 +0.2 4,115,872 - dusB LU632_RS21510 0.85 +1.6 4,115,961 + +4.6 4,115,961 + +2.0 4,115,962 - +2.4 4,116,006 - +6.4 4,116,006 - +3.4 4,116,006 - -1.8 4,116,022 + -0.1 4,116,035 - +5.5 4,116,054 - fis LU632_RS21515 0.16 +1.9 4,116,117 + fis LU632_RS21515 0.37 +1.8 4,116,131 - fis LU632_RS21515 0.42 -1.2 4,116,131 - fis LU632_RS21515 0.42 +3.6 4,116,156 + fis LU632_RS21515 0.51 +3.2 4,116,157 - fis LU632_RS21515 0.51 +1.3 4,116,157 - fis LU632_RS21515 0.51 +4.7 4,116,157 - fis LU632_RS21515 0.51 +3.6 4,116,197 + fis LU632_RS21515 0.64 +4.8 4,116,210 + fis LU632_RS21515 0.69 +4.6 4,116,212 + fis LU632_RS21515 0.69 +3.6 4,116,212 + fis LU632_RS21515 0.69 +2.2 4,116,212 + fis LU632_RS21515 0.69 +2.4
Or see this region's nucleotide sequence