Strain Fitness in Erwinia tracheiphila SCR3 around LU632_RS21510

Experiment: Experiment:TE2, Cucumber 5 Petiole 1 (TE2-S-C5-P1)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Experiment:TE2, Cucumber 5 Petiole 1 (TE2-S-C5-P1)
4,114,117	+		LU632_RS21505	0.20	-0.7
4,114,118	-		LU632_RS21505	0.21	+1.2
4,114,118	-		LU632_RS21505	0.21	-0.7
4,114,134	+		LU632_RS21505	0.23	-0.6
4,114,218	+		LU632_RS21505	0.34	-2.0
4,114,218	+		LU632_RS21505	0.34	-1.5
4,114,221	+		LU632_RS21505	0.35	-0.4
4,114,221	+		LU632_RS21505	0.35	-1.2
4,114,221	+		LU632_RS21505	0.35	+0.3
4,114,222	-		LU632_RS21505	0.35	-3.0
4,114,222	-		LU632_RS21505	0.35	-2.0
4,114,222	-		LU632_RS21505	0.35	-0.4
4,114,224	+		LU632_RS21505	0.35	-0.5
4,114,224	+		LU632_RS21505	0.35	+0.8
4,114,225	-		LU632_RS21505	0.35	-1.4
4,114,281	+		LU632_RS21505	0.43	+1.7
4,114,396	-		LU632_RS21505	0.58	-2.9
4,114,525	+		LU632_RS21505	0.76	-0.4
4,114,525	+		LU632_RS21505	0.76	-0.8
4,114,526	-		LU632_RS21505	0.76	+2.1
4,114,750	-				-0.4
4,114,759	-				+0.2
4,114,799	-				-1.8
4,114,814	-				-0.6
4,114,815	+				-0.9
4,114,974	+				+5.9
4,114,974	+				+3.2
4,114,978	-				+3.5
4,115,000	+				-0.4
4,115,001	-				+6.2
4,115,001	-				+4.8
4,115,001	-				+0.7
4,115,023	+				+3.0
4,115,120	+	dusB	LU632_RS21510	0.10	+1.9
4,115,120	+	dusB	LU632_RS21510	0.10	+2.5
4,115,121	-	dusB	LU632_RS21510	0.10	+3.7
4,115,270	+	dusB	LU632_RS21510	0.25	-1.6
4,115,271	-	dusB	LU632_RS21510	0.25	+3.9
4,115,322	-	dusB	LU632_RS21510	0.30	+2.6
4,115,337	-	dusB	LU632_RS21510	0.32	+1.4
4,115,452	+	dusB	LU632_RS21510	0.43	+1.5
4,115,452	+	dusB	LU632_RS21510	0.43	+1.3
4,115,452	+	dusB	LU632_RS21510	0.43	+0.2
4,115,452	+	dusB	LU632_RS21510	0.43	+3.2
4,115,452	+	dusB	LU632_RS21510	0.43	+0.9
4,115,452	+	dusB	LU632_RS21510	0.43	+2.1
4,115,452	+	dusB	LU632_RS21510	0.43	+2.5
4,115,453	-	dusB	LU632_RS21510	0.43	+1.7
4,115,462	+	dusB	LU632_RS21510	0.44	+0.7
4,115,470	+	dusB	LU632_RS21510	0.45	-0.4
4,115,475	-	dusB	LU632_RS21510	0.45	+4.9
4,115,528	+	dusB	LU632_RS21510	0.51	+4.6
4,115,529	-	dusB	LU632_RS21510	0.51	+1.2
4,115,659	-	dusB	LU632_RS21510	0.64	-3.1
4,115,780	+	dusB	LU632_RS21510	0.76	-0.8
4,115,780	+	dusB	LU632_RS21510	0.76	+1.5
4,115,800	-	dusB	LU632_RS21510	0.78	+4.6
4,115,803	+	dusB	LU632_RS21510	0.78	+2.2
4,115,823	+	dusB	LU632_RS21510	0.80	+0.2
4,115,872	-	dusB	LU632_RS21510	0.85	+1.6
4,115,961	+				+4.6
4,115,961	+				+2.0
4,115,962	-				+2.4
4,116,006	-				+6.4
4,116,006	-				+3.4
4,116,006	-				-1.8
4,116,022	+				-0.1
4,116,035	-				+5.5
4,116,054	-	fis	LU632_RS21515	0.16	+1.9
4,116,117	+	fis	LU632_RS21515	0.37	+1.8
4,116,131	-	fis	LU632_RS21515	0.42	-1.2
4,116,131	-	fis	LU632_RS21515	0.42	+3.6
4,116,156	+	fis	LU632_RS21515	0.51	+3.2
4,116,157	-	fis	LU632_RS21515	0.51	+1.3
4,116,157	-	fis	LU632_RS21515	0.51	+4.7
4,116,157	-	fis	LU632_RS21515	0.51	+3.6
4,116,197	+	fis	LU632_RS21515	0.64	+4.8
4,116,210	+	fis	LU632_RS21515	0.69	+4.6
4,116,212	+	fis	LU632_RS21515	0.69	+3.6
4,116,212	+	fis	LU632_RS21515	0.69	+2.2
4,116,212	+	fis	LU632_RS21515	0.69	+2.4