Strain Fitness in Erwinia tracheiphila SCR3 around LU632_RS21355

Experiment: Experiment:TE2, Cucumber 5 Petiole 1 (TE2-S-C5-P1)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Experiment:TE2, Cucumber 5 Petiole 1 (TE2-S-C5-P1)
4,081,214	-		LU632_RS21345	0.76	-1.1
4,081,255	+		LU632_RS21345	0.80	-1.4
4,081,255	+		LU632_RS21345	0.80	-1.4
4,081,256	-		LU632_RS21345	0.80	+0.0
4,081,256	-		LU632_RS21345	0.80	-1.8
4,081,257	+		LU632_RS21345	0.80	-1.4
4,081,257	+		LU632_RS21345	0.80	+0.2
4,081,258	-		LU632_RS21345	0.80	-1.1
4,081,258	-		LU632_RS21345	0.80	-2.4
4,081,305	-		LU632_RS21345	0.84	-0.6
4,081,309	+		LU632_RS21345	0.84	-0.7
4,081,333	+		LU632_RS21345	0.87	-0.8
4,081,333	+		LU632_RS21345	0.87	-0.2
4,081,367	-		LU632_RS21345	0.90	-2.0
4,081,378	-				-0.1
4,081,381	+				-2.3
4,081,484	-				-0.9
4,081,484	-				+0.1
4,081,484	-				-1.0
4,081,592	-				+0.5
4,081,600	+				+0.2
4,081,601	-				+2.6
4,081,632	+				-0.7
4,081,655	-				-1.1
4,081,666	+				-1.1
4,081,667	-				+2.1
4,081,669	+				+0.4
4,081,670	-				+1.2
4,081,682	+				-2.0
4,081,741	+		LU632_RS21350	0.18	+2.5
4,081,775	+		LU632_RS21350	0.26	+2.4
4,081,864	+		LU632_RS21350	0.48	-0.4
4,081,897	+		LU632_RS21350	0.56	+1.8
4,081,923	+		LU632_RS21350	0.62	+0.6
4,082,079	+				+1.9
4,082,080	-				+1.5
4,082,080	-				+1.6
4,082,083	-				+1.6
4,082,155	-				+2.8
4,082,155	-				+2.2
4,082,170	+				+1.0
4,082,238	+				+1.7
4,082,238	+				+0.5
4,082,239	-				-0.8
4,082,242	+				-0.4
4,082,358	+		LU632_RS21355	0.12	-0.8
4,082,359	-		LU632_RS21355	0.12	-2.0
4,082,359	-		LU632_RS21355	0.12	+1.1
4,082,392	+		LU632_RS21355	0.15	-0.9
4,082,393	-		LU632_RS21355	0.15	+0.2
4,082,394	+		LU632_RS21355	0.15	+1.9
4,082,507	+		LU632_RS21355	0.23	-1.1
4,082,507	+		LU632_RS21355	0.23	+1.2
4,082,508	-		LU632_RS21355	0.23	+1.2
4,082,509	+		LU632_RS21355	0.23	+0.2
4,082,686	-		LU632_RS21355	0.36	+3.2
4,082,755	+		LU632_RS21355	0.41	-1.2
4,082,755	+		LU632_RS21355	0.41	-0.4
4,082,755	+		LU632_RS21355	0.41	-0.8
4,082,756	-		LU632_RS21355	0.41	+1.8
4,082,756	-		LU632_RS21355	0.41	-0.8
4,082,756	-		LU632_RS21355	0.41	-2.6
4,082,756	-		LU632_RS21355	0.41	+0.7
4,082,757	+		LU632_RS21355	0.42	+1.2
4,082,757	+		LU632_RS21355	0.42	+0.0
4,082,757	+		LU632_RS21355	0.42	-0.4
4,082,875	+		LU632_RS21355	0.50	+2.4
4,082,875	+		LU632_RS21355	0.50	-0.8
4,082,876	-		LU632_RS21355	0.50	-0.6
4,082,876	-		LU632_RS21355	0.50	+0.6
4,082,876	-		LU632_RS21355	0.50	-0.5
4,082,973	+		LU632_RS21355	0.57	+1.9
4,083,020	-		LU632_RS21355	0.61	+0.7
4,083,292	+		LU632_RS21355	0.81	-1.8
4,083,292	+		LU632_RS21355	0.81	-2.0
4,083,293	-		LU632_RS21355	0.81	+0.9
4,083,427	+				+0.3
4,083,427	+				-0.2
4,083,427	+				-1.1
4,083,428	-				+1.0
4,083,428	-				+0.5
4,083,428	-				+2.3
4,083,430	+				+1.6
4,083,480	+				+2.1
4,083,481	-				+0.6
4,083,490	+				-0.8
4,083,491	-				+1.7
4,083,535	+				-0.5
4,083,535	+				-0.4
4,083,536	-				-1.6
4,083,536	-				+0.2
4,083,536	-				-1.1
4,083,540	-				+0.7
4,083,540	-				+0.6
4,083,540	-				+0.5
4,083,646	+				-3.1
4,083,646	+				-4.4
4,083,647	-				-6.2
4,083,686	-				+0.2
4,083,772	-	degS	LU632_RS21360	0.13	+0.2
4,083,816	+	degS	LU632_RS21360	0.17	-0.4
4,083,816	+	degS	LU632_RS21360	0.17	-3.7
4,083,899	+	degS	LU632_RS21360	0.25	-1.4
4,083,952	+	degS	LU632_RS21360	0.30	-1.1
4,084,020	-	degS	LU632_RS21360	0.37	-4.2
4,084,055	+	degS	LU632_RS21360	0.40	-4.7
4,084,056	-	degS	LU632_RS21360	0.40	-4.9
4,084,060	+	degS	LU632_RS21360	0.40	-4.2
4,084,110	+	degS	LU632_RS21360	0.45	-2.5
4,084,110	+	degS	LU632_RS21360	0.45	-1.1
4,084,111	-	degS	LU632_RS21360	0.45	-3.4
4,084,112	+	degS	LU632_RS21360	0.45	-4.3
4,084,113	-	degS	LU632_RS21360	0.45	-2.0
4,084,113	-	degS	LU632_RS21360	0.45	-3.8
4,084,142	+	degS	LU632_RS21360	0.48	-4.8
4,084,295	+	degS	LU632_RS21360	0.63	+1.2
4,084,296	-	degS	LU632_RS21360	0.63	-3.4
4,084,296	-	degS	LU632_RS21360	0.63	-4.9
4,084,401	-	degS	LU632_RS21360	0.73	-1.4
4,084,401	-	degS	LU632_RS21360	0.73	-3.5
4,084,407	-	degS	LU632_RS21360	0.73	-2.6
4,084,408	+	degS	LU632_RS21360	0.73	-4.2
4,084,409	-	degS	LU632_RS21360	0.73	-1.4
4,084,433	-	degS	LU632_RS21360	0.76	-1.8
4,084,461	-	degS	LU632_RS21360	0.78	-1.8
4,084,461	-	degS	LU632_RS21360	0.78	-2.4
4,084,461	-	degS	LU632_RS21360	0.78	-2.0
4,084,535	-	degS	LU632_RS21360	0.85	-1.4
4,084,535	-	degS	LU632_RS21360	0.85	-5.7
4,084,547	-	degS	LU632_RS21360	0.86	-3.8
4,084,553	+	degS	LU632_RS21360	0.87	-4.3
4,084,553	+	degS	LU632_RS21360	0.87	-3.3