Strain Fitness in Erwinia tracheiphila SCR3 around LU632_RS21260

Experiment: Experiment:TE2, Cucumber 5 Petiole 1 (TE2-S-C5-P1)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntkdsD and kdsC are separated by 15 nucleotideskdsC and lptC overlap by 4 nucleotideslptC and lptA overlap by 29 nucleotides LU632_RS21255: kdsD - arabinose-5-phosphate isomerase KdsD, at 4,058,706 to 4,059,692 kdsD LU632_RS21260: kdsC - 3-deoxy-manno-octulosonate-8-phosphatase KdsC, at 4,059,708 to 4,060,274 kdsC LU632_RS21265: lptC - LPS export ABC transporter periplasmic protein LptC, at 4,060,271 to 4,060,846 lptC LU632_RS21270: lptA - lipopolysaccharide ABC transporter substrate-binding protein LptA, at 4,060,818 to 4,061,366 lptA Position (kb) 4059 4060 4061Strain fitness (log2 ratio) -3 -2 -1 0 1at 4059.700 kb on + strandat 4059.700 kb on + strandat 4060.071 kb on + strand, within kdsCat 4060.071 kb on + strand, within kdsCat 4060.073 kb on + strand, within kdsCat 4060.073 kb on + strand, within kdsCat 4060.073 kb on + strand, within kdsCat 4060.073 kb on + strand, within kdsCat 4060.073 kb on + strand, within kdsCat 4060.073 kb on + strand, within kdsCat 4060.073 kb on + strand, within kdsCat 4060.166 kb on + strand, within kdsCat 4060.170 kb on + strand, within kdsCat 4060.170 kb on + strand, within kdsCat 4060.170 kb on + strand, within kdsC

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Per-strain Table

Position Strand Gene LocusTag Fraction Experiment:TE2, Cucumber 5 Petiole 1 (TE2-S-C5-P1)
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4,059,700 + -1.7
4,059,700 + +0.1
4,060,071 + kdsC LU632_RS21260 0.64 -2.9
4,060,071 + kdsC LU632_RS21260 0.64 -0.9
4,060,073 + kdsC LU632_RS21260 0.64 -1.7
4,060,073 + kdsC LU632_RS21260 0.64 -1.9
4,060,073 + kdsC LU632_RS21260 0.64 -1.7
4,060,073 + kdsC LU632_RS21260 0.64 -0.7
4,060,073 + kdsC LU632_RS21260 0.64 -2.8
4,060,073 + kdsC LU632_RS21260 0.64 -0.5
4,060,073 + kdsC LU632_RS21260 0.64 -0.5
4,060,166 + kdsC LU632_RS21260 0.81 -0.1
4,060,170 + kdsC LU632_RS21260 0.81 +0.1
4,060,170 + kdsC LU632_RS21260 0.81 -1.5
4,060,170 + kdsC LU632_RS21260 0.81 -3.0

Or see this region's nucleotide sequence