Strain Fitness in Erwinia tracheiphila SCR3 around LU632_RS21050

Experiment: Experiment:TE2, Cucumber 5 Petiole 1 (TE2-S-C5-P1)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Experiment:TE2, Cucumber 5 Petiole 1 (TE2-S-C5-P1)
4,023,163	-				-0.6
4,023,168	-				+2.2
4,023,168	-				+0.2
4,023,224	+				-1.4
4,023,339	+	rpsO	LU632_RS21045	0.14	+0.4
4,023,634	-				+0.7
4,023,678	+				-1.8
4,023,678	+				+0.2
4,023,678	+				+3.1
4,023,678	+				+1.2
4,023,679	-				+1.8
4,023,679	-				+0.5
4,023,683	-				-2.2
4,023,758	+				+0.2
4,023,759	-				-1.2
4,023,833	+	truB	LU632_RS21050	0.16	-0.8
4,023,834	-	truB	LU632_RS21050	0.16	+1.6
4,023,838	+	truB	LU632_RS21050	0.17	-0.3
4,023,838	+	truB	LU632_RS21050	0.17	+0.7
4,023,838	+	truB	LU632_RS21050	0.17	+1.9
4,023,839	-	truB	LU632_RS21050	0.17	+0.7
4,023,907	-	truB	LU632_RS21050	0.24	-0.5
4,023,918	+	truB	LU632_RS21050	0.25	-0.8
4,023,990	-	truB	LU632_RS21050	0.33	+3.3
4,024,004	-	truB	LU632_RS21050	0.34	+2.9
4,024,030	+	truB	LU632_RS21050	0.37	-0.2
4,024,058	+	truB	LU632_RS21050	0.40	+0.8
4,024,058	+	truB	LU632_RS21050	0.40	-1.4
4,024,059	-	truB	LU632_RS21050	0.40	+0.0
4,024,059	-	truB	LU632_RS21050	0.40	+0.8
4,024,059	-	truB	LU632_RS21050	0.40	+7.1
4,024,059	-	truB	LU632_RS21050	0.40	+1.3
4,024,059	-	truB	LU632_RS21050	0.40	-1.3
4,024,090	+	truB	LU632_RS21050	0.43	+0.3
4,024,090	+	truB	LU632_RS21050	0.43	+1.3
4,024,090	+	truB	LU632_RS21050	0.43	+1.9
4,024,090	+	truB	LU632_RS21050	0.43	+0.3
4,024,094	+	truB	LU632_RS21050	0.44	-0.8
4,024,094	+	truB	LU632_RS21050	0.44	+1.2
4,024,095	-	truB	LU632_RS21050	0.44	+0.6
4,024,194	+	truB	LU632_RS21050	0.54	-0.1
4,024,195	-	truB	LU632_RS21050	0.54	-0.8
4,024,216	+	truB	LU632_RS21050	0.57	+0.5
4,024,364	+	truB	LU632_RS21050	0.72	+4.6
4,024,424	-	truB	LU632_RS21050	0.79	+0.2
4,024,572	-				-2.8
4,024,636	+				+0.8
4,024,685	-	rbfA	LU632_RS21055	0.15	-0.7
4,024,685	-	rbfA	LU632_RS21055	0.15	+2.2
4,025,084	-				+0.4
4,025,129	-				+0.9