Strain Fitness in Erwinia tracheiphila SCR3 around LU632_RS20985

Experiment: Experiment:TE2, Cucumber 5 Petiole 1 (TE2-S-C5-P1)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Experiment:TE2, Cucumber 5 Petiole 1 (TE2-S-C5-P1)
4,010,550	+	nrdD	LU632_RS20975	0.77	-1.7
4,010,590	+	nrdD	LU632_RS20975	0.79	+0.1
4,010,593	+	nrdD	LU632_RS20975	0.79	+0.2
4,010,593	+	nrdD	LU632_RS20975	0.79	+1.1
4,010,593	+	nrdD	LU632_RS20975	0.79	-0.1
4,010,618	+	nrdD	LU632_RS20975	0.80	-1.2
4,010,618	+	nrdD	LU632_RS20975	0.80	-0.1
4,010,783	+	nrdD	LU632_RS20975	0.88	+1.1
4,010,783	+	nrdD	LU632_RS20975	0.88	-1.5
4,010,784	-	nrdD	LU632_RS20975	0.88	-0.6
4,010,784	-	nrdD	LU632_RS20975	0.88	-2.2
4,010,785	+	nrdD	LU632_RS20975	0.88	-2.0
4,010,785	+	nrdD	LU632_RS20975	0.88	+1.1
4,010,785	+	nrdD	LU632_RS20975	0.88	+0.1
4,010,789	+	nrdD	LU632_RS20975	0.88	-0.8
4,010,790	-	nrdD	LU632_RS20975	0.88	-0.6
4,010,807	+	nrdD	LU632_RS20975	0.89	-1.4
4,010,808	-	nrdD	LU632_RS20975	0.89	+1.6
4,011,001	-				+2.0
4,011,019	+				+0.7
4,011,019	+				-1.9
4,011,020	-				-0.1
4,011,020	-				+2.8
4,011,020	-				+0.0
4,011,020	-				+1.6
4,011,020	-				-0.3
4,011,036	+				+1.4
4,011,048	-				+0.3
4,011,055	+				+0.1
4,011,056	-				+1.7
4,011,139	+	nrdG	LU632_RS20980	0.21	+0.5
4,011,140	-	nrdG	LU632_RS20980	0.22	+3.1
4,011,181	-	nrdG	LU632_RS20980	0.30	-0.4
4,011,339	+	nrdG	LU632_RS20980	0.64	-1.7
4,011,340	-	nrdG	LU632_RS20980	0.65	-0.6
4,011,490	+				-0.1
4,011,497	+				-2.9
4,011,497	+				-2.0
4,011,497	+				-0.1
4,011,511	+				+1.1
4,011,511	+				-3.1
4,011,511	+				-0.6
4,011,511	+				+1.8
4,011,512	-				+0.7
4,011,551	+				-1.9
4,011,552	-				+1.1
4,011,582	+		LU632_RS20985	0.17	-0.1
4,011,630	+		LU632_RS20985	0.28	+1.9
4,011,643	+		LU632_RS20985	0.31	-0.2
4,011,643	+		LU632_RS20985	0.31	-2.2
4,011,691	+		LU632_RS20985	0.42	+4.5
4,011,692	-		LU632_RS20985	0.42	-0.3
4,011,696	+		LU632_RS20985	0.43	+2.7
4,011,763	+		LU632_RS20985	0.59	+1.9
4,011,764	-		LU632_RS20985	0.59	+0.0
4,011,774	-		LU632_RS20985	0.62	-2.2
4,011,911	+				+0.4
4,011,984	+				-1.2
4,011,984	+				+1.8
4,012,086	+		LU632_RS20990	0.13	-0.4
4,012,086	+		LU632_RS20990	0.13	+0.9
4,012,088	+		LU632_RS20990	0.14	+0.4
4,012,327	+				+0.6
4,012,327	+				-0.4
4,012,328	-				-1.2
4,012,336	+				+0.4
4,012,341	-				+0.0
4,012,341	-				+0.4
4,012,361	-				-1.1
4,012,593	-		LU632_RS20995	0.51	-0.7
4,012,647	+		LU632_RS20995	0.62	-1.8
4,012,647	+		LU632_RS20995	0.62	+2.6
4,012,680	+		LU632_RS20995	0.68	+1.4
4,012,737	+		LU632_RS20995	0.80	-1.7
4,012,737	+		LU632_RS20995	0.80	+1.9
4,012,786	-		LU632_RS20995	0.89	+1.3
4,012,880	+				-2.9
4,012,881	-				+1.4
4,012,925	+		LU632_RS21000	0.18	+1.5
4,012,925	+		LU632_RS21000	0.18	+0.5
4,012,925	+		LU632_RS21000	0.18	-0.8