Strain Fitness in Erwinia tracheiphila SCR3 around LU632_RS20790

Experiment: Experiment:TE2, Cucumber 5 Petiole 1 (TE2-S-C5-P1)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntLU632_RS20785 and LU632_RS20790 are separated by 15 nucleotidesLU632_RS20790 and LU632_RS20795 overlap by 50 nucleotides LU632_RS20785: LU632_RS20785 - hypothetical protein, at 3,966,443 to 3,968,047 _RS20785 LU632_RS20790: LU632_RS20790 - tyrosine-type recombinase/integrase, at 3,968,063 to 3,969,388 _RS20790 LU632_RS20795: LU632_RS20795 - site-specific integrase, at 3,969,339 to 3,970,607 _RS20795 Position (kb) 3968 3969 3970Strain fitness (log2 ratio) -3 -2 -1 0 1at 3967.580 kb on - strand, within LU632_RS20785at 3967.848 kb on - strand, within LU632_RS20785at 3968.541 kb on + strand, within LU632_RS20790at 3968.638 kb on - strand, within LU632_RS20790at 3969.406 kb on - strandat 3969.406 kb on - strandat 3969.491 kb on + strand, within LU632_RS20795at 3970.041 kb on + strand, within LU632_RS20795at 3970.041 kb on + strand, within LU632_RS20795

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Per-strain Table

Position Strand Gene LocusTag Fraction Experiment:TE2, Cucumber 5 Petiole 1 (TE2-S-C5-P1)
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3,967,580 - LU632_RS20785 0.71 -0.6
3,967,848 - LU632_RS20785 0.88 -3.6
3,968,541 + LU632_RS20790 0.36 -1.4
3,968,638 - LU632_RS20790 0.43 -1.6
3,969,406 - +0.3
3,969,406 - +1.6
3,969,491 + LU632_RS20795 0.12 +1.1
3,970,041 + LU632_RS20795 0.55 +0.8
3,970,041 + LU632_RS20795 0.55 -1.3

Or see this region's nucleotide sequence