Strain Fitness in Erwinia tracheiphila SCR3 around LU632_RS20650

Experiment: Experiment:TE2, Cucumber 5 Petiole 1 (TE2-S-C5-P1)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Experiment:TE2, Cucumber 5 Petiole 1 (TE2-S-C5-P1)
3,932,764	+		LU632_RS20645	0.31	+1.0
3,932,765	-		LU632_RS20645	0.31	+1.2
3,932,772	+		LU632_RS20645	0.32	-0.4
3,932,772	+		LU632_RS20645	0.32	+1.6
3,932,772	+		LU632_RS20645	0.32	+1.6
3,932,772	+		LU632_RS20645	0.32	+0.3
3,932,773	-		LU632_RS20645	0.32	+0.1
3,932,773	-		LU632_RS20645	0.32	+1.1
3,932,773	-		LU632_RS20645	0.32	+0.6
3,932,773	-		LU632_RS20645	0.32	+0.8
3,932,773	-		LU632_RS20645	0.32	-0.4
3,932,773	-		LU632_RS20645	0.32	+1.1
3,932,773	-		LU632_RS20645	0.32	+0.9
3,932,774	+		LU632_RS20645	0.32	+1.1
3,932,775	-		LU632_RS20645	0.32	-1.3
3,932,875	+		LU632_RS20645	0.41	+2.7
3,932,976	+		LU632_RS20645	0.49	-1.2
3,932,976	+		LU632_RS20645	0.49	-0.4
3,933,021	-		LU632_RS20645	0.53	+1.1
3,933,293	-		LU632_RS20645	0.77	+0.1
3,933,293	-		LU632_RS20645	0.77	-0.1
3,933,296	+		LU632_RS20645	0.77	-1.0
3,933,334	+		LU632_RS20645	0.80	+0.6
3,933,397	+		LU632_RS20645	0.86	-1.4
3,933,397	+		LU632_RS20645	0.86	-0.3
3,933,427	+		LU632_RS20645	0.88	-0.4
3,933,444	-		LU632_RS20645	0.90	-1.2
3,933,444	-		LU632_RS20645	0.90	+1.5
3,933,468	+				+0.9
3,933,469	-				+0.5
3,933,489	+				+0.3
3,933,539	+				+2.6
3,933,621	+				-0.1
3,933,622	-				+1.1
3,933,622	-				+0.7
3,933,625	+				+0.2
3,933,625	+				-1.9
3,933,626	-				+1.1
3,933,696	-	ygiD	LU632_RS20650	0.12	+0.8
3,933,710	+	ygiD	LU632_RS20650	0.14	-1.2
3,933,782	-	ygiD	LU632_RS20650	0.23	+2.0
3,933,815	+	ygiD	LU632_RS20650	0.28	+1.1
3,933,815	+	ygiD	LU632_RS20650	0.28	+0.6
3,933,815	+	ygiD	LU632_RS20650	0.28	+0.2
3,933,842	+	ygiD	LU632_RS20650	0.31	+2.9
3,933,842	+	ygiD	LU632_RS20650	0.31	-2.0
3,933,842	+	ygiD	LU632_RS20650	0.31	-0.2
3,933,843	-	ygiD	LU632_RS20650	0.31	+3.2
3,933,874	-	ygiD	LU632_RS20650	0.35	+1.1
3,933,912	+	ygiD	LU632_RS20650	0.40	+0.0
3,933,991	-	ygiD	LU632_RS20650	0.50	-2.7
3,933,991	-	ygiD	LU632_RS20650	0.50	+1.1
3,934,159	+	ygiD	LU632_RS20650	0.71	+2.0
3,934,302	+	ygiD	LU632_RS20650	0.90	-0.9
3,934,302	+	ygiD	LU632_RS20650	0.90	+0.9
3,934,306	-				+2.5
3,934,308	+				-0.0
3,934,308	+				-0.0
3,934,308	+				+0.4
3,934,309	-				-1.4
3,934,309	-				+1.0
3,934,310	+				+0.4
3,934,311	-				-0.4
3,934,311	-				+1.2
3,934,369	-				+2.4
3,934,369	-				-4.2
3,934,369	-				-1.2
3,934,424	+				+0.8
3,934,425	-				+0.7
3,934,437	+				-0.8
3,934,560	+				-0.9
3,934,580	-				-0.3
3,934,690	+				+2.9
3,934,694	-				+0.4
3,934,904	+				+0.2
3,934,928	-				+1.3