Strain Fitness in Erwinia tracheiphila SCR3 around LU632_RS20225

Experiment: Experiment:TE2, Cucumber 5 Petiole 1 (TE2-S-C5-P1)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Experiment:TE2, Cucumber 5 Petiole 1 (TE2-S-C5-P1)
3,847,871	-				+0.8
3,847,875	+				-0.1
3,847,875	+				+2.0
3,847,875	+				-1.6
3,847,875	+				-0.9
3,847,876	-				+1.8
3,847,876	-				-0.1
3,847,876	-				-1.9
3,847,877	+				-2.6
3,847,877	+				-2.2
3,847,879	+				+1.1
3,847,879	+				+0.7
3,847,880	-				+0.8
3,847,880	-				-2.6
3,848,075	-		LU632_RS20215	0.24	+0.0
3,848,181	-		LU632_RS20215	0.40	+1.5
3,848,181	-		LU632_RS20215	0.40	+0.8
3,848,181	-		LU632_RS20215	0.40	-0.5
3,848,196	+		LU632_RS20215	0.42	+1.1
3,848,197	-		LU632_RS20215	0.42	-1.0
3,848,382	+		LU632_RS20215	0.69	+1.1
3,848,415	+		LU632_RS20215	0.74	+2.8
3,848,415	+		LU632_RS20215	0.74	-0.0
3,848,415	+		LU632_RS20215	0.74	-0.9
3,848,415	+		LU632_RS20215	0.74	-0.9
3,848,415	+		LU632_RS20215	0.74	-0.8
3,848,415	+		LU632_RS20215	0.74	-0.9
3,848,416	-		LU632_RS20215	0.74	-0.0
3,848,416	-		LU632_RS20215	0.74	-1.7
3,848,416	-		LU632_RS20215	0.74	+0.7
3,848,416	-		LU632_RS20215	0.74	-0.3
3,848,416	-		LU632_RS20215	0.74	+0.5
3,848,416	-		LU632_RS20215	0.74	+1.1
3,848,479	-		LU632_RS20215	0.83	+1.1
3,848,486	-		LU632_RS20215	0.84	-1.9
3,848,520	-		LU632_RS20215	0.89	+2.7
3,849,041	+		LU632_RS20225	0.35	-0.4
3,849,077	-		LU632_RS20225	0.42	+1.2
3,849,079	-		LU632_RS20225	0.42	+2.0
3,849,079	-		LU632_RS20225	0.42	+1.1
3,850,211	+				-2.3