Strain Fitness in Erwinia tracheiphila SCR3 around LU632_RS19840

Experiment: Experiment:TE2, Cucumber 5 Petiole 1 (TE2-S-C5-P1)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Experiment:TE2, Cucumber 5 Petiole 1 (TE2-S-C5-P1)
3,769,309	+		LU632_RS19830	0.74	-0.5
3,769,309	+		LU632_RS19830	0.74	+0.3
3,769,309	+		LU632_RS19830	0.74	-1.5
3,769,312	+		LU632_RS19830	0.74	-0.7
3,769,312	+		LU632_RS19830	0.74	-0.9
3,769,315	+		LU632_RS19830	0.75	+0.1
3,769,315	+		LU632_RS19830	0.75	-1.2
3,769,315	+		LU632_RS19830	0.75	-1.4
3,769,316	-		LU632_RS19830	0.75	-1.8
3,769,316	-		LU632_RS19830	0.75	-0.5
3,769,319	+		LU632_RS19830	0.75	-1.9
3,769,320	-		LU632_RS19830	0.75	+1.1
3,769,320	-		LU632_RS19830	0.75	+0.1
3,769,414	+		LU632_RS19830	0.87	-0.2
3,769,531	+				-1.0
3,769,603	+				-1.2
3,769,636	+				+1.2
3,769,674	+				-1.9
3,769,723	+	rcsF	LU632_RS19835	0.15	+1.1
3,769,731	-	rcsF	LU632_RS19835	0.17	-1.0
3,769,732	+	rcsF	LU632_RS19835	0.17	-0.5
3,769,732	+	rcsF	LU632_RS19835	0.17	+0.6
3,769,784	-	rcsF	LU632_RS19835	0.30	-2.4
3,769,921	+	rcsF	LU632_RS19835	0.63	+0.4
3,769,958	-	rcsF	LU632_RS19835	0.73	-0.5
3,769,958	-	rcsF	LU632_RS19835	0.73	+0.5
3,769,995	+	rcsF	LU632_RS19835	0.82	-0.9
3,769,996	-	rcsF	LU632_RS19835	0.82	+1.8
3,770,148	+	tsaA	LU632_RS19840	0.12	-0.1
3,770,177	+	tsaA	LU632_RS19840	0.16	-0.1
3,770,177	+	tsaA	LU632_RS19840	0.16	+0.9
3,770,188	+	tsaA	LU632_RS19840	0.17	-0.2
3,770,188	+	tsaA	LU632_RS19840	0.17	+0.6
3,770,232	+	tsaA	LU632_RS19840	0.24	+4.3
3,770,232	+	tsaA	LU632_RS19840	0.24	+0.7
3,770,232	+	tsaA	LU632_RS19840	0.24	-0.9
3,770,232	+	tsaA	LU632_RS19840	0.24	+0.2
3,770,232	+	tsaA	LU632_RS19840	0.24	-0.7
3,770,232	+	tsaA	LU632_RS19840	0.24	+0.1
3,770,232	+	tsaA	LU632_RS19840	0.24	+0.5
3,770,232	+	tsaA	LU632_RS19840	0.24	+1.1
3,770,233	-	tsaA	LU632_RS19840	0.24	+0.7
3,770,233	-	tsaA	LU632_RS19840	0.24	+1.3
3,770,233	-	tsaA	LU632_RS19840	0.24	+2.1
3,770,233	-	tsaA	LU632_RS19840	0.24	+1.1
3,770,233	-	tsaA	LU632_RS19840	0.24	-1.7
3,770,234	+	tsaA	LU632_RS19840	0.24	+1.2
3,770,234	+	tsaA	LU632_RS19840	0.24	+0.8
3,770,234	+	tsaA	LU632_RS19840	0.24	-0.0
3,770,234	+	tsaA	LU632_RS19840	0.24	+0.7
3,770,234	+	tsaA	LU632_RS19840	0.24	+1.0
3,770,234	+	tsaA	LU632_RS19840	0.24	+0.3
3,770,234	+	tsaA	LU632_RS19840	0.24	+1.4
3,770,235	-	tsaA	LU632_RS19840	0.24	-0.4
3,770,235	-	tsaA	LU632_RS19840	0.24	+0.1
3,770,235	-	tsaA	LU632_RS19840	0.24	+1.3
3,770,235	-	tsaA	LU632_RS19840	0.24	-2.2
3,770,235	-	tsaA	LU632_RS19840	0.24	-0.5
3,770,235	-	tsaA	LU632_RS19840	0.24	+1.0
3,770,235	-	tsaA	LU632_RS19840	0.24	-0.3
3,770,235	-	tsaA	LU632_RS19840	0.24	+1.8
3,770,263	-	tsaA	LU632_RS19840	0.28	+3.2
3,770,322	-	tsaA	LU632_RS19840	0.36	+1.3
3,770,469	+	tsaA	LU632_RS19840	0.57	+2.5
3,770,476	+	tsaA	LU632_RS19840	0.58	-1.2
3,770,535	+	tsaA	LU632_RS19840	0.66	-1.7
3,770,535	+	tsaA	LU632_RS19840	0.66	-0.1
3,770,535	+	tsaA	LU632_RS19840	0.66	-0.1
3,770,535	+	tsaA	LU632_RS19840	0.66	-1.2
3,770,535	+	tsaA	LU632_RS19840	0.66	+0.4
3,770,536	-	tsaA	LU632_RS19840	0.67	-0.2
3,770,536	-	tsaA	LU632_RS19840	0.67	-0.7
3,770,536	-	tsaA	LU632_RS19840	0.67	+2.6
3,770,536	-	tsaA	LU632_RS19840	0.67	-1.1
3,770,623	-	tsaA	LU632_RS19840	0.79	+0.3
3,770,659	+	tsaA	LU632_RS19840	0.84	+0.9
3,770,812	+				-0.1
3,770,812	+				+1.4