Strain Fitness in Erwinia tracheiphila SCR3 around LU632_RS19775

Experiment: Experiment:TE2, Cucumber 5 Petiole 1 (TE2-S-C5-P1)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Experiment:TE2, Cucumber 5 Petiole 1 (TE2-S-C5-P1)
3,755,605	+		LU632_RS19770	0.18	+3.1
3,755,605	+		LU632_RS19770	0.18	+0.9
3,755,606	-		LU632_RS19770	0.18	-0.1
3,755,606	-		LU632_RS19770	0.18	-0.5
3,755,606	-		LU632_RS19770	0.18	+1.1
3,755,656	+		LU632_RS19770	0.23	-0.9
3,755,717	+		LU632_RS19770	0.29	-2.5
3,755,733	-		LU632_RS19770	0.30	-1.7
3,755,791	-		LU632_RS19770	0.36	-0.2
3,755,793	+		LU632_RS19770	0.36	-2.6
3,755,924	+		LU632_RS19770	0.49	-2.1
3,755,934	+		LU632_RS19770	0.50	-1.3
3,755,934	+		LU632_RS19770	0.50	+0.3
3,755,934	+		LU632_RS19770	0.50	-1.9
3,755,935	-		LU632_RS19770	0.50	-2.3
3,755,937	-		LU632_RS19770	0.50	-2.3
3,756,028	-		LU632_RS19770	0.59	-1.8
3,756,028	-		LU632_RS19770	0.59	+1.1
3,756,065	+		LU632_RS19770	0.63	+1.6
3,756,066	-		LU632_RS19770	0.63	-1.9
3,756,066	-		LU632_RS19770	0.63	-1.2
3,756,074	-		LU632_RS19770	0.64	-2.7
3,756,136	-		LU632_RS19770	0.70	-1.3
3,756,137	+		LU632_RS19770	0.70	-1.9
3,756,137	+		LU632_RS19770	0.70	-0.5
3,756,296	+		LU632_RS19770	0.85	+1.1
3,756,306	+		LU632_RS19770	0.86	-0.9
3,756,306	+		LU632_RS19770	0.86	-0.7
3,756,307	-		LU632_RS19770	0.86	-0.3
3,756,308	+		LU632_RS19770	0.86	-0.5
3,756,325	+		LU632_RS19770	0.88	-0.4
3,756,329	+		LU632_RS19770	0.88	-1.1
3,756,329	+		LU632_RS19770	0.88	-2.9
3,756,330	-		LU632_RS19770	0.89	-1.9
3,756,330	-		LU632_RS19770	0.89	-0.9
3,756,330	-		LU632_RS19770	0.89	-1.4
3,756,362	+				-1.1
3,756,384	-				+0.2
3,756,426	+				+0.1
3,756,439	+				-1.5
3,756,439	+				-2.5
3,756,439	+				-0.1
3,756,445	-				-0.8
3,756,475	+				+0.4
3,756,650	+		LU632_RS19775	0.11	-2.9
3,756,672	-		LU632_RS19775	0.13	-0.5
3,756,714	-		LU632_RS19775	0.17	+0.6
3,756,754	-		LU632_RS19775	0.20	-1.3
3,756,754	-		LU632_RS19775	0.20	-1.7
3,756,894	+		LU632_RS19775	0.32	-0.8
3,756,894	+		LU632_RS19775	0.32	-4.0
3,756,894	+		LU632_RS19775	0.32	+0.1
3,757,001	+		LU632_RS19775	0.41	+1.1
3,757,002	-		LU632_RS19775	0.41	-1.5
3,757,028	-		LU632_RS19775	0.43	-1.3
3,757,029	+		LU632_RS19775	0.43	-0.8
3,757,029	+		LU632_RS19775	0.43	-2.4
3,757,029	+		LU632_RS19775	0.43	+0.2
3,757,030	-		LU632_RS19775	0.43	-0.7
3,757,030	-		LU632_RS19775	0.43	-1.2
3,757,030	-		LU632_RS19775	0.43	-1.3
3,757,030	-		LU632_RS19775	0.43	-1.1
3,757,031	+		LU632_RS19775	0.43	-0.9
3,757,031	+		LU632_RS19775	0.43	-0.9
3,757,031	+		LU632_RS19775	0.43	+1.1
3,757,031	+		LU632_RS19775	0.43	-1.3
3,757,031	+		LU632_RS19775	0.43	-0.2
3,757,031	+		LU632_RS19775	0.43	-1.5
3,757,032	-		LU632_RS19775	0.44	-1.6
3,757,032	-		LU632_RS19775	0.44	-1.2
3,757,070	+		LU632_RS19775	0.47	-0.9
3,757,140	-		LU632_RS19775	0.53	-1.8
3,757,155	-		LU632_RS19775	0.54	+0.6
3,757,161	-		LU632_RS19775	0.54	-2.3
3,757,161	-		LU632_RS19775	0.54	+3.0
3,757,327	-		LU632_RS19775	0.69	-0.3
3,757,329	-		LU632_RS19775	0.69	-1.8
3,757,329	-		LU632_RS19775	0.69	+0.8
3,757,329	-		LU632_RS19775	0.69	+0.1
3,757,470	-		LU632_RS19775	0.81	-0.7
3,757,470	-		LU632_RS19775	0.81	-1.7
3,757,624	-				-1.9
3,757,662	-				-1.5
3,757,665	+				-2.4
3,757,711	-				+0.3
3,757,722	-				-2.2
3,757,821	+				-3.5
3,757,843	-		LU632_RS19780	0.12	-1.4
3,757,921	-		LU632_RS19780	0.19	-2.1
3,757,971	+		LU632_RS19780	0.23	+0.3
3,757,972	-		LU632_RS19780	0.23	-2.3
3,757,976	-		LU632_RS19780	0.24	+0.1
3,758,008	-		LU632_RS19780	0.27	+1.1
3,758,008	-		LU632_RS19780	0.27	+0.3
3,758,134	+		LU632_RS19780	0.38	-0.3
3,758,135	-		LU632_RS19780	0.38	-1.0
3,758,203	-		LU632_RS19780	0.44	-0.3
3,758,214	-		LU632_RS19780	0.45	+0.5
3,758,373	+		LU632_RS19780	0.60	+0.4
3,758,374	-		LU632_RS19780	0.60	-1.0
3,758,374	-		LU632_RS19780	0.60	-1.3
3,758,374	-		LU632_RS19780	0.60	-1.0
3,758,385	+		LU632_RS19780	0.61	+0.5
3,758,386	-		LU632_RS19780	0.61	-1.5
3,758,397	+		LU632_RS19780	0.62	-2.1
3,758,397	+		LU632_RS19780	0.62	-2.1
3,758,443	+		LU632_RS19780	0.66	-0.1
3,758,443	+		LU632_RS19780	0.66	+0.4
3,758,443	+		LU632_RS19780	0.66	-0.3
3,758,447	+		LU632_RS19780	0.67	-0.0
3,758,447	+		LU632_RS19780	0.67	-0.4
3,758,447	+		LU632_RS19780	0.67	-1.9
3,758,448	-		LU632_RS19780	0.67	-3.6
3,758,484	+		LU632_RS19780	0.70	-0.5
3,758,520	-		LU632_RS19780	0.73	+0.1
3,758,548	-		LU632_RS19780	0.76	-0.5
3,758,616	+		LU632_RS19780	0.82	-1.1
3,758,651	+		LU632_RS19780	0.85	-1.3
3,758,651	+		LU632_RS19780	0.85	+2.2
3,758,652	-		LU632_RS19780	0.85	+1.7
3,758,655	+		LU632_RS19780	0.85	+1.1
3,758,697	+		LU632_RS19780	0.89	-0.8
3,758,697	+		LU632_RS19780	0.89	-1.6