Strain Fitness in Erwinia tracheiphila SCR3 around LU632_RS19600

Experiment: Experiment:TE2, Cucumber 5 Petiole 1 (TE2-S-C5-P1)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Experiment:TE2, Cucumber 5 Petiole 1 (TE2-S-C5-P1)
3,715,931	+				+0.4
3,715,932	-				-1.8
3,715,932	-				+0.8
3,715,932	-				+0.4
3,716,576	+				-0.2
3,716,576	+				+1.6
3,716,576	+				+2.0
3,716,657	+				+0.6
3,716,660	+				+0.3
3,716,661	-				+0.5
3,716,686	-				+0.8
3,716,772	+				+2.6
3,716,772	+				-2.0
3,716,772	+				-2.4
3,716,773	-				-0.9
3,716,773	-				-1.3
3,716,773	-				+0.8
3,716,810	+				+1.8
3,716,811	-				+1.8
3,717,030	+	argH	LU632_RS19600	0.16	-0.6
3,717,030	+	argH	LU632_RS19600	0.16	-0.6
3,717,030	+	argH	LU632_RS19600	0.16	-1.6
3,717,030	+	argH	LU632_RS19600	0.16	-2.1
3,717,031	-	argH	LU632_RS19600	0.16	-1.0
3,717,094	-	argH	LU632_RS19600	0.20	-4.1
3,717,094	-	argH	LU632_RS19600	0.20	-1.8
3,717,094	-	argH	LU632_RS19600	0.20	-2.4
3,717,228	+	argH	LU632_RS19600	0.30	-1.0
3,717,239	+	argH	LU632_RS19600	0.31	+0.3
3,717,260	-	argH	LU632_RS19600	0.32	-4.3
3,717,260	-	argH	LU632_RS19600	0.32	+1.2
3,717,317	-	argH	LU632_RS19600	0.37	-0.6
3,717,317	-	argH	LU632_RS19600	0.37	-0.6
3,717,317	-	argH	LU632_RS19600	0.37	-4.5
3,717,408	+	argH	LU632_RS19600	0.43	-4.3
3,717,628	-	argH	LU632_RS19600	0.59	-2.1
3,717,675	-	argH	LU632_RS19600	0.63	-1.8
3,717,729	-	argH	LU632_RS19600	0.67	-0.6
3,717,729	-	argH	LU632_RS19600	0.67	+2.0
3,717,785	-	argH	LU632_RS19600	0.71	-2.8
3,717,876	+	argH	LU632_RS19600	0.77	-3.7
3,717,880	+	argH	LU632_RS19600	0.78	+1.0
3,717,881	-	argH	LU632_RS19600	0.78	-3.2
3,717,930	-	argH	LU632_RS19600	0.81	-1.1
3,717,930	-	argH	LU632_RS19600	0.81	-2.2
3,717,930	-	argH	LU632_RS19600	0.81	-1.6
3,717,930	-	argH	LU632_RS19600	0.81	+0.0
3,717,990	+	argH	LU632_RS19600	0.86	-5.3
3,718,075	+				-1.8
3,718,075	+				-3.4
3,718,077	+				-3.7
3,718,078	-				-2.7
3,718,078	-				-2.0
3,718,078	-				-2.4
3,718,087	-				+0.0
3,718,215	+				-3.6
3,718,218	+				-1.6
3,718,225	-				+0.1
3,718,352	+				-0.6
3,718,402	-		LU632_RS19605	0.11	-2.9
3,718,535	+		LU632_RS19605	0.22	-1.9
3,718,536	-		LU632_RS19605	0.22	-1.1
3,718,544	+		LU632_RS19605	0.22	-1.0
3,718,544	+		LU632_RS19605	0.22	-1.1
3,718,545	-		LU632_RS19605	0.22	-3.7
3,718,545	-		LU632_RS19605	0.22	-1.6
3,718,545	-		LU632_RS19605	0.22	-0.7
3,718,545	-		LU632_RS19605	0.22	+1.0
3,719,079	-		LU632_RS19605	0.66	-1.0