Strain Fitness in Erwinia tracheiphila SCR3 around LU632_RS19580

Experiment: Experiment:TE2, Cucumber 5 Petiole 1 (TE2-S-C5-P1)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Experiment:TE2, Cucumber 5 Petiole 1 (TE2-S-C5-P1)
3,712,637	+				-0.3
3,712,638	-				+0.4
3,712,638	-				-1.6
3,712,659	+				+0.0
3,712,683	+				-0.5
3,712,684	-				+0.2
3,712,686	+				-1.7
3,712,734	+				+0.3
3,712,737	+				+1.0
3,712,737	+				+1.1
3,712,738	-				-1.3
3,712,800	+	fabR	LU632_RS19580	0.18	+3.7
3,712,847	-	fabR	LU632_RS19580	0.25	+5.2
3,713,027	-	fabR	LU632_RS19580	0.54	+5.5
3,713,053	+	fabR	LU632_RS19580	0.58	-0.2
3,713,053	+	fabR	LU632_RS19580	0.58	+5.3
3,713,054	-	fabR	LU632_RS19580	0.58	+3.8
3,713,117	+	fabR	LU632_RS19580	0.68	+3.2
3,713,118	-	fabR	LU632_RS19580	0.68	+2.5
3,713,354	-				+0.3
3,713,355	+				+4.8
3,713,372	+				-2.1
3,713,378	-				+0.8
3,713,411	-				+1.1
3,713,423	-				+0.4
3,713,434	-				-2.0
3,713,495	+				+0.6
3,713,499	+				+0.0
3,713,499	+				-1.0
3,713,500	-				-3.2
3,713,500	-				-2.1
3,713,506	+				+0.8
3,713,507	-				-2.4
3,713,507	-				-3.6
3,713,507	-				-2.5
3,713,539	+				-3.2
3,713,539	+				-3.3
3,713,539	+				+1.0
3,713,540	-				-2.0
3,713,630	-				-1.8
3,713,738	-	sthA	LU632_RS19585	0.16	+1.0
3,713,986	+	sthA	LU632_RS19585	0.34	-1.3
3,713,987	-	sthA	LU632_RS19585	0.34	-2.7
3,714,048	+	sthA	LU632_RS19585	0.38	-0.5
3,714,048	+	sthA	LU632_RS19585	0.38	-3.1
3,714,048	+	sthA	LU632_RS19585	0.38	-1.5
3,714,049	-	sthA	LU632_RS19585	0.38	-1.8
3,714,049	-	sthA	LU632_RS19585	0.38	-2.4
3,714,214	-	sthA	LU632_RS19585	0.50	-3.7
3,714,230	+	sthA	LU632_RS19585	0.51	-1.3
3,714,230	+	sthA	LU632_RS19585	0.51	-3.7
3,714,311	+	sthA	LU632_RS19585	0.57	-2.4