Strain Fitness in Erwinia tracheiphila SCR3 around LU632_RS19470

Experiment: Experiment:TE2, Cucumber 5 Petiole 1 (TE2-S-C5-P1)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Experiment:TE2, Cucumber 5 Petiole 1 (TE2-S-C5-P1)
3,686,378	+				-0.0
3,686,378	+				-2.3
3,686,413	-				+0.2
3,686,667	+				-0.9
3,686,855	+	rsmJ	LU632_RS19465	0.31	+1.0
3,686,855	+	rsmJ	LU632_RS19465	0.31	+0.5
3,686,856	-	rsmJ	LU632_RS19465	0.31	-3.0
3,686,886	+	rsmJ	LU632_RS19465	0.35	-1.6
3,686,886	+	rsmJ	LU632_RS19465	0.35	-1.5
3,686,887	-	rsmJ	LU632_RS19465	0.35	+1.0
3,686,906	-	rsmJ	LU632_RS19465	0.38	-0.7
3,687,113	+	rsmJ	LU632_RS19465	0.65	+2.6
3,687,114	-	rsmJ	LU632_RS19465	0.65	-1.3
3,687,360	+				-0.1
3,687,361	-				+3.0
3,687,397	+				-2.0
3,687,567	+				-1.0
3,687,584	-	prlC	LU632_RS19470	0.10	+0.3
3,687,584	-	prlC	LU632_RS19470	0.10	-1.3
3,687,592	+	prlC	LU632_RS19470	0.11	-0.5
3,687,912	-	prlC	LU632_RS19470	0.26	-2.8
3,687,956	+	prlC	LU632_RS19470	0.29	-1.3
3,688,097	-	prlC	LU632_RS19470	0.35	-2.0
3,688,201	+	prlC	LU632_RS19470	0.40	-1.8
3,688,296	-	prlC	LU632_RS19470	0.45	+1.0
3,688,307	+	prlC	LU632_RS19470	0.46	+1.0
3,688,388	-	prlC	LU632_RS19470	0.50	+2.0
3,688,393	+	prlC	LU632_RS19470	0.50	-3.4
3,688,418	-	prlC	LU632_RS19470	0.51	-2.5
3,688,717	+	prlC	LU632_RS19470	0.66	-1.3
3,688,718	-	prlC	LU632_RS19470	0.66	+0.0
3,688,750	+	prlC	LU632_RS19470	0.67	+0.0
3,688,768	+	prlC	LU632_RS19470	0.68	+1.0
3,688,769	-	prlC	LU632_RS19470	0.68	+1.0
3,688,922	+	prlC	LU632_RS19470	0.76	-2.3
3,688,922	+	prlC	LU632_RS19470	0.76	-2.5
3,689,132	+	prlC	LU632_RS19470	0.86	-1.6
3,689,132	+	prlC	LU632_RS19470	0.86	+0.0
3,689,133	-	prlC	LU632_RS19470	0.86	-1.8
3,689,133	-	prlC	LU632_RS19470	0.86	-3.4
3,689,134	+	prlC	LU632_RS19470	0.86	-1.6
3,689,135	-	prlC	LU632_RS19470	0.86	+1.0
3,689,164	+	prlC	LU632_RS19470	0.87	-0.6
3,689,201	+	prlC	LU632_RS19470	0.89	+1.0
3,689,435	+				-3.0
3,689,436	-				-0.3
3,689,436	-				-0.6
3,689,436	-				+0.4
3,689,439	+				-0.8
3,689,440	-				+0.5
3,689,513	+				+1.2
3,689,514	-				+2.6
3,689,540	+				+1.3
3,689,550	-				+0.4
3,689,572	+				-2.7
3,689,572	+				-2.2
3,689,583	+				+0.2
3,689,598	+				+1.0
3,689,629	-				+1.4
3,689,629	-				-1.3
3,689,636	+				-0.1
3,689,806	-		LU632_RS19475	0.41	+1.4
3,689,810	+		LU632_RS19475	0.42	-1.0
3,689,810	+		LU632_RS19475	0.42	+1.1
3,689,860	-		LU632_RS19475	0.63	-2.6
3,689,908	+		LU632_RS19475	0.83	+0.2
3,689,908	+		LU632_RS19475	0.83	+0.9
3,689,945	+				+1.4
3,689,945	+				+2.6
3,689,945	+				-0.2
3,689,945	+				+0.8
3,689,946	-				-0.1
3,689,946	-				+0.5
3,689,974	-				-1.6
3,689,974	-				+0.7
3,690,055	-				-1.3
3,690,119	-				+1.0
3,690,283	+		LU632_RS19480	0.20	-1.8
3,690,329	+		LU632_RS19480	0.26	+0.7
3,690,329	+		LU632_RS19480	0.26	-0.3