Strain Fitness in Erwinia tracheiphila SCR3 around LU632_RS19450

Experiment: Experiment:TE2, Cucumber 5 Petiole 1 (TE2-S-C5-P1)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Experiment:TE2, Cucumber 5 Petiole 1 (TE2-S-C5-P1)
3,682,950	-		LU632_RS19445	0.42	+0.0
3,682,960	+		LU632_RS19445	0.43	+0.3
3,683,021	+		LU632_RS19445	0.48	-1.6
3,683,041	+		LU632_RS19445	0.50	+0.5
3,683,042	-		LU632_RS19445	0.50	-1.8
3,683,088	-		LU632_RS19445	0.54	+0.7
3,683,143	+		LU632_RS19445	0.59	-2.0
3,683,143	+		LU632_RS19445	0.59	-1.4
3,683,144	-		LU632_RS19445	0.59	-0.6
3,683,362	+		LU632_RS19445	0.77	-1.3
3,683,437	+		LU632_RS19445	0.83	+2.2
3,683,437	+		LU632_RS19445	0.83	-0.3
3,683,437	+		LU632_RS19445	0.83	+1.2
3,683,437	+		LU632_RS19445	0.83	-0.1
3,683,438	-		LU632_RS19445	0.84	-0.6
3,683,634	-				+1.3
3,683,669	+				-0.1
3,683,676	+				-0.8
3,683,676	+				+1.1
3,683,677	-				-0.2
3,683,677	-				-1.3
3,683,677	-				+0.7
3,683,712	-				+0.8
3,683,712	-				-0.6
3,683,889	+				-0.5
3,683,890	-				-0.5
3,684,077	-	pitA	LU632_RS19450	0.15	-0.5
3,684,267	-	pitA	LU632_RS19450	0.27	+0.5
3,684,284	+	pitA	LU632_RS19450	0.28	+0.0
3,684,296	+	pitA	LU632_RS19450	0.29	-2.0
3,684,564	+	pitA	LU632_RS19450	0.47	-1.0
3,684,567	+	pitA	LU632_RS19450	0.47	-1.0
3,684,612	+	pitA	LU632_RS19450	0.50	-3.1
3,684,673	+	pitA	LU632_RS19450	0.54	-0.5
3,685,014	+	pitA	LU632_RS19450	0.77	-1.3
3,685,114	+	pitA	LU632_RS19450	0.84	-2.4
3,685,172	-	pitA	LU632_RS19450	0.88	-1.3
3,685,203	-	pitA	LU632_RS19450	0.90	+1.0
3,685,313	+				-0.5
3,685,355	-				+0.9
3,685,378	-				+0.4
3,685,562	+	uspB	LU632_RS19455	0.41	-1.3
3,685,563	-	uspB	LU632_RS19455	0.42	+4.5
3,685,563	-	uspB	LU632_RS19455	0.42	+1.8
3,685,564	+	uspB	LU632_RS19455	0.42	+2.6
3,685,564	+	uspB	LU632_RS19455	0.42	-2.0
3,685,565	-	uspB	LU632_RS19455	0.42	+0.2
3,685,565	-	uspB	LU632_RS19455	0.42	-3.5
3,685,626	+	uspB	LU632_RS19455	0.60	+1.8
3,685,626	+	uspB	LU632_RS19455	0.60	-0.9
3,685,627	-	uspB	LU632_RS19455	0.61	+3.0
3,685,627	-	uspB	LU632_RS19455	0.61	+0.5
3,685,627	-	uspB	LU632_RS19455	0.61	-2.3
3,685,627	-	uspB	LU632_RS19455	0.61	+0.8
3,685,630	+	uspB	LU632_RS19455	0.62	+0.5
3,685,662	+	uspB	LU632_RS19455	0.71	-0.7
3,685,663	-	uspB	LU632_RS19455	0.71	+0.9
3,685,668	+	uspB	LU632_RS19455	0.73	+0.7
3,685,725	+	uspB	LU632_RS19455	0.90	+2.0
3,685,725	+	uspB	LU632_RS19455	0.90	+0.0
3,685,726	-				+0.7
3,685,726	-				-2.5
3,685,726	-				-0.8
3,685,726	-				+0.8
3,685,759	+				+3.4
3,685,760	-				-0.5
3,685,789	-				-1.2
3,685,934	+				+1.6
3,685,965	-				+1.1
3,685,980	-				-3.8
3,685,980	-				+1.0
3,685,980	-				+3.4
3,685,986	+				+2.0
3,685,986	+				+0.0
3,685,987	-				-1.8
3,685,988	+				+1.8
3,685,988	+				+0.7
3,686,027	+	uspA	LU632_RS19460	0.11	+0.2
3,686,067	+	uspA	LU632_RS19460	0.20	-1.1
3,686,106	+	uspA	LU632_RS19460	0.29	-1.5
3,686,150	+	uspA	LU632_RS19460	0.39	+1.0
3,686,283	+	uspA	LU632_RS19460	0.70	-1.5
3,686,290	+	uspA	LU632_RS19460	0.71	+1.0
3,686,291	-	uspA	LU632_RS19460	0.71	+2.0
3,686,291	-	uspA	LU632_RS19460	0.71	+0.6