Strain Fitness in Erwinia tracheiphila SCR3 around LU632_RS19385

Experiment: Experiment:TE2, Cucumber 5 Petiole 1 (TE2-S-C5-P1)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Experiment:TE2, Cucumber 5 Petiole 1 (TE2-S-C5-P1)
3,663,250	+				+1.4
3,663,291	-				-0.2
3,663,566	+				+2.4
3,663,588	+				+0.1
3,663,588	+				+0.7
3,663,588	+				-0.7
3,663,588	+				+2.1
3,663,589	-				+0.4
3,663,589	-				+0.1
3,663,592	+				-1.8
3,663,593	-				-1.6
3,663,593	-				-1.0
3,663,665	-				+0.8
3,663,675	-				+0.3
3,663,810	+				-1.5
3,663,810	+				+0.8
3,663,839	+		LU632_RS19380	0.21	+2.2
3,663,839	+		LU632_RS19380	0.21	+0.3
3,663,839	+		LU632_RS19380	0.21	-0.3
3,663,932	-		LU632_RS19380	0.57	-1.3
3,663,957	+		LU632_RS19380	0.67	+0.0
3,663,958	-		LU632_RS19380	0.67	+1.8
3,663,963	+		LU632_RS19380	0.69	+0.1
3,663,963	+		LU632_RS19380	0.69	+0.9
3,663,963	-		LU632_RS19380	0.69	-1.4
3,663,964	-		LU632_RS19380	0.69	+1.6
3,663,989	-		LU632_RS19380	0.79	-0.5
3,664,092	+				+1.2
3,664,165	+		LU632_RS19385	0.49	+0.1
3,664,204	-		LU632_RS19385	0.71	-0.0
3,664,223	+		LU632_RS19385	0.82	+1.5
3,664,224	-		LU632_RS19385	0.82	+3.6
3,664,279	+				+1.8
3,664,280	-				-1.0
3,664,314	+				+1.5
3,664,329	+				-0.2
3,664,332	+				+1.3
3,664,452	-				+0.3
3,664,452	-				+0.1
3,664,455	+				-0.1
3,664,494	-				+1.0
3,664,511	-				-1.5
3,664,511	-				+1.8
3,664,515	+				+1.0
3,664,515	+				+1.0
3,664,530	-				-0.7
3,664,534	-				+0.4
3,664,602	-				-2.2
3,664,602	-				-0.8
3,664,604	-				+0.5
3,664,604	-				-0.9
3,664,606	+				+1.1
3,664,648	-		LU632_RS19390	0.13	-0.4
3,664,749	+		LU632_RS19390	0.26	-1.5
3,664,753	-		LU632_RS19390	0.27	-0.0
3,664,829	+		LU632_RS19390	0.37	+1.8
3,664,833	+		LU632_RS19390	0.37	+1.3
3,664,845	+		LU632_RS19390	0.39	-0.0
3,664,846	-		LU632_RS19390	0.39	-0.0
3,664,854	+		LU632_RS19390	0.40	-1.3
3,664,867	-		LU632_RS19390	0.42	+0.3
3,664,964	-		LU632_RS19390	0.55	+0.3
3,665,121	-		LU632_RS19390	0.76	+0.4
3,665,121	-		LU632_RS19390	0.76	-1.0
3,665,160	-		LU632_RS19390	0.81	+0.4
3,665,168	-		LU632_RS19390	0.82	-0.7
3,665,181	-		LU632_RS19390	0.84	-2.8
3,665,181	-		LU632_RS19390	0.84	-0.1
3,665,219	+		LU632_RS19390	0.89	-1.6
3,665,220	-		LU632_RS19390	0.89	+1.0
3,665,220	-		LU632_RS19390	0.89	+1.0
3,665,236	+				-0.3
3,665,253	+				-0.5