Strain Fitness in Erwinia tracheiphila SCR3 around LU632_RS19360

Experiment: Experiment:TE2, Cucumber 5 Petiole 1 (TE2-S-C5-P1)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Experiment:TE2, Cucumber 5 Petiole 1 (TE2-S-C5-P1)
3,660,480	-				+0.8
3,660,531	-				+0.0
3,660,531	-				+0.1
3,660,540	-				+0.0
3,660,608	+		LU632_RS19355	0.13	-0.9
3,660,640	-		LU632_RS19355	0.19	-2.0
3,660,654	+		LU632_RS19355	0.21	+0.3
3,660,655	-		LU632_RS19355	0.22	+0.6
3,660,723	+		LU632_RS19355	0.34	+1.4
3,660,723	+		LU632_RS19355	0.34	-0.0
3,660,729	+		LU632_RS19355	0.36	+0.0
3,660,729	+		LU632_RS19355	0.36	-2.5
3,660,730	-		LU632_RS19355	0.36	-2.2
3,660,731	+		LU632_RS19355	0.36	-1.0
3,660,731	+		LU632_RS19355	0.36	+1.3
3,660,732	-		LU632_RS19355	0.36	+0.4
3,660,732	-		LU632_RS19355	0.36	+2.1
3,660,732	-		LU632_RS19355	0.36	+0.4
3,660,732	-		LU632_RS19355	0.36	+0.2
3,660,734	-		LU632_RS19355	0.37	+0.2
3,660,734	-		LU632_RS19355	0.37	-0.4
3,660,735	+		LU632_RS19355	0.37	+0.2
3,660,735	+		LU632_RS19355	0.37	-1.9
3,660,735	+		LU632_RS19355	0.37	+1.9
3,660,736	-		LU632_RS19355	0.37	+1.2
3,660,809	+		LU632_RS19355	0.51	+1.1
3,660,815	-		LU632_RS19355	0.52	-1.0
3,660,837	+		LU632_RS19355	0.56	-0.4
3,660,900	+		LU632_RS19355	0.68	+0.5
3,660,901	-		LU632_RS19355	0.68	-1.5
3,660,901	-		LU632_RS19355	0.68	-2.9
3,660,903	-		LU632_RS19355	0.69	-3.2
3,660,903	-		LU632_RS19355	0.69	-1.3
3,660,903	-		LU632_RS19355	0.69	+1.0
3,660,946	-		LU632_RS19355	0.77	-0.9
3,661,047	-				-0.6
3,661,047	-				+1.6
3,661,062	+				-0.8
3,661,062	+				-1.8
3,661,123	-				+0.9
3,661,258	+				+0.7
3,661,258	+				+0.7
3,661,258	+				+0.8
3,661,259	-				+0.6
3,661,259	-				-0.1
3,661,263	-				-0.6
3,661,297	+				-0.6
3,661,320	+				+3.6
3,661,539	-		LU632_RS19360	0.76	-1.7
3,661,541	+		LU632_RS19360	0.77	-1.8
3,661,586	-				+3.0
3,661,840	-		LU632_RS19365	0.49	-0.1
3,661,909	+		LU632_RS19365	0.64	-0.2
3,661,947	+		LU632_RS19365	0.72	+2.5
3,661,967	+		LU632_RS19365	0.76	+0.5
3,661,967	+		LU632_RS19365	0.76	-0.8
3,661,968	-		LU632_RS19365	0.76	-0.1
3,661,980	+		LU632_RS19365	0.79	-3.3
3,661,980	+		LU632_RS19365	0.79	-1.3
3,661,981	-		LU632_RS19365	0.79	-1.6
3,662,065	-				-1.3
3,662,100	+				+3.4
3,662,100	+				+0.4
3,662,121	+				+0.1
3,662,144	+				+0.5
3,662,218	-				+0.3
3,662,417	+				+0.3
3,662,436	+				+0.7
3,662,532	+		LU632_RS19375	0.38	+0.9
3,662,532	+		LU632_RS19375	0.38	-1.3
3,662,532	+		LU632_RS19375	0.38	+1.7
3,662,533	-		LU632_RS19375	0.39	-0.2
3,662,533	-		LU632_RS19375	0.39	+0.2
3,662,537	-		LU632_RS19375	0.40	+0.2
3,662,563	+		LU632_RS19375	0.50	+2.4