Strain Fitness in Erwinia tracheiphila SCR3 around LU632_RS18850

Experiment: Experiment:TE2, Cucumber 5 Petiole 1 (TE2-S-C5-P1)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Experiment:TE2, Cucumber 5 Petiole 1 (TE2-S-C5-P1)
3,555,467	+	thiI	LU632_RS18845	0.63	+0.4
3,555,527	+	thiI	LU632_RS18845	0.67	-0.1
3,555,527	+	thiI	LU632_RS18845	0.67	+1.4
3,555,528	-	thiI	LU632_RS18845	0.67	+1.7
3,555,915	+				+0.6
3,555,955	-				+0.2
3,555,974	+				+0.2
3,555,974	+				+0.9
3,556,043	+				+0.1
3,556,044	-				+2.7
3,556,044	-				+0.1
3,556,056	+				+0.9
3,556,056	+				+0.8
3,556,099	+				-0.1
3,556,155	-				+0.8
3,556,206	+				-0.5
3,556,212	+				-0.9
3,556,227	-				+1.3
3,556,327	+				-0.4
3,556,381	+		LU632_RS18850	0.17	+0.7
3,556,382	-		LU632_RS18850	0.17	+0.9
3,556,384	-		LU632_RS18850	0.18	-0.9
3,556,440	+		LU632_RS18850	0.31	+1.8
3,556,441	-		LU632_RS18850	0.31	+2.3
3,556,557	-		LU632_RS18850	0.58	-1.4
3,556,610	+		LU632_RS18850	0.70	+1.4
3,556,620	+		LU632_RS18850	0.72	+0.5
3,556,632	+		LU632_RS18850	0.75	+1.5
3,556,634	+		LU632_RS18850	0.75	-2.1
3,556,693	+		LU632_RS18850	0.89	-1.9
3,556,693	+		LU632_RS18850	0.89	+1.7
3,556,793	+				+1.5
3,556,822	+		LU632_RS18855	0.12	-0.2
3,556,823	-		LU632_RS18855	0.12	+0.8
3,556,823	-		LU632_RS18855	0.12	+0.2
3,556,938	+		LU632_RS18855	0.29	+0.4
3,556,965	+		LU632_RS18855	0.33	-0.8
3,556,979	+		LU632_RS18855	0.35	-0.6
3,556,979	+		LU632_RS18855	0.35	+0.3
3,556,979	+		LU632_RS18855	0.35	-0.4
3,556,979	+		LU632_RS18855	0.35	+0.2
3,557,015	+		LU632_RS18855	0.40	+0.8
3,557,015	+		LU632_RS18855	0.40	+1.1
3,557,015	+		LU632_RS18855	0.40	-2.0
3,557,016	-		LU632_RS18855	0.40	-0.1
3,557,256	+		LU632_RS18855	0.74	+1.4
3,557,256	+		LU632_RS18855	0.74	-1.8
3,557,261	-		LU632_RS18855	0.75	+0.2
3,557,268	+		LU632_RS18855	0.76	-1.2
3,557,268	+		LU632_RS18855	0.76	+2.1
3,557,269	-		LU632_RS18855	0.76	+0.6
3,557,301	-		LU632_RS18855	0.80	-2.4
3,557,352	-		LU632_RS18855	0.88	+0.0
3,557,372	-				+1.3
3,557,373	+				-0.6
3,557,375	+				+0.8
3,557,376	-				+0.6
3,557,376	-				+1.0
3,557,376	-				-2.4
3,557,430	-				-0.3
3,557,505	+				+0.9
3,557,514	+				+1.6
3,557,515	-				+0.9
3,557,515	-				+1.9