Strain Fitness in Erwinia tracheiphila SCR3 around LU632_RS18615

Experiment: Experiment:TE2, Cucumber 5 Petiole 1 (TE2-S-C5-P1)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Experiment:TE2, Cucumber 5 Petiole 1 (TE2-S-C5-P1)
3,520,026	+	pgpA	LU632_RS18615	0.39	+1.6
3,520,042	+	pgpA	LU632_RS18615	0.43	+1.0
3,520,042	+	pgpA	LU632_RS18615	0.43	+3.9
3,520,043	-	pgpA	LU632_RS18615	0.43	+0.5
3,520,110	+	pgpA	LU632_RS18615	0.56	+0.6
3,520,258	-	pgpA	LU632_RS18615	0.85	-1.0
3,520,269	+	pgpA	LU632_RS18615	0.87	+2.9
3,520,270	-	pgpA	LU632_RS18615	0.88	+1.2
3,520,270	-	pgpA	LU632_RS18615	0.88	+1.0
3,520,273	-	pgpA	LU632_RS18615	0.88	+1.7
3,520,303	+				+0.7
3,520,303	+				+1.9
3,520,304	+				+1.1
3,520,330	+				+1.5
3,520,342	+				+2.0
3,520,343	-				-2.1
3,520,410	+				-0.0
3,520,411	-				+1.0
3,520,468	-				+0.7
3,520,565	+		LU632_RS18620	0.19	-2.8
3,520,566	-		LU632_RS18620	0.19	+1.3
3,520,566	-		LU632_RS18620	0.19	-1.4
3,520,566	-		LU632_RS18620	0.19	-2.2
3,520,795	+		LU632_RS18620	0.43	-0.7
3,520,796	-		LU632_RS18620	0.43	-3.9
3,520,847	-		LU632_RS18620	0.48	+1.0
3,520,847	-		LU632_RS18620	0.48	-0.5
3,520,847	-		LU632_RS18620	0.48	-0.0
3,520,873	+		LU632_RS18620	0.51	+0.7
3,520,873	+		LU632_RS18620	0.51	-1.2
3,520,874	-		LU632_RS18620	0.51	-0.0
3,520,895	-		LU632_RS18620	0.53	+0.3
3,520,994	-		LU632_RS18620	0.63	+0.1
3,521,036	+		LU632_RS18620	0.68	+2.4
3,521,083	+		LU632_RS18620	0.72	+1.5
3,521,122	+		LU632_RS18620	0.76	-2.4
3,521,123	-		LU632_RS18620	0.77	+0.9
3,521,170	+		LU632_RS18620	0.81	+0.4
3,521,260	+				-1.1