Strain Fitness in Erwinia tracheiphila SCR3 around LU632_RS18430

Experiment: Experiment:TE2, Cucumber 5 Petiole 1 (TE2-S-C5-P1)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Experiment:TE2, Cucumber 5 Petiole 1 (TE2-S-C5-P1)
3,482,593	-				-0.7
3,482,593	-				-2.3
3,482,594	+				-1.1
3,482,594	+				-2.3
3,482,594	+				+0.9
3,482,595	-				+0.9
3,482,637	-				+0.3
3,482,640	+				-0.5
3,482,640	+				-0.4
3,482,640	+				-0.3
3,482,641	-				+2.1
3,482,641	-				+1.2
3,482,641	-				+2.4
3,482,749	+		LU632_RS18425	0.17	+0.9
3,482,750	-		LU632_RS18425	0.17	+1.4
3,482,762	-		LU632_RS18425	0.19	+1.0
3,482,798	+		LU632_RS18425	0.23	+1.1
3,483,330	+				+3.4
3,483,330	-				-1.8
3,483,351	+				+0.5
3,483,351	+				-2.3
3,483,351	+				+1.5
3,483,351	+				+0.3
3,483,352	-				+0.1
3,483,369	+				+0.2
3,483,534	+				+0.5
3,483,535	-				+1.2
3,483,535	-				-0.4
3,483,541	+				+0.7
3,483,635	+		LU632_RS18430	0.13	-1.5
3,483,686	+		LU632_RS18430	0.19	+1.4
3,483,686	+		LU632_RS18430	0.19	+4.7
3,483,687	-		LU632_RS18430	0.19	+1.0
3,483,687	-		LU632_RS18430	0.19	+1.1
3,483,691	+		LU632_RS18430	0.19	+1.8
3,483,692	-		LU632_RS18430	0.19	+1.9
3,483,729	-		LU632_RS18430	0.24	+0.7
3,483,748	+		LU632_RS18430	0.26	+1.3
3,483,748	+		LU632_RS18430	0.26	-0.8
3,483,777	-		LU632_RS18430	0.29	-1.1
3,483,884	+		LU632_RS18430	0.41	+0.8
3,483,933	+		LU632_RS18430	0.46	+1.1
3,484,073	+		LU632_RS18430	0.61	+2.7
3,484,073	+		LU632_RS18430	0.61	-1.1
3,484,074	-		LU632_RS18430	0.62	+2.2
3,484,248	-		LU632_RS18430	0.81	+2.2
3,484,308	+		LU632_RS18430	0.87	+2.7
3,484,308	+		LU632_RS18430	0.87	+1.3
3,484,309	-		LU632_RS18430	0.88	+0.9
3,484,497	+				-1.9
3,484,498	-				+1.7
3,484,498	-				-0.0
3,484,498	-				+2.2
3,484,499	+				+1.1
3,484,500	-				+0.3
3,484,618	+				+0.4
3,484,619	-				+0.8
3,484,643	-				+0.0
3,484,790	+	hutW	LU632_RS18435	0.12	-0.1
3,484,791	-	hutW	LU632_RS18435	0.12	+1.2
3,484,838	+	hutW	LU632_RS18435	0.16	+2.6
3,484,874	+	hutW	LU632_RS18435	0.18	-2.1
3,484,880	-	hutW	LU632_RS18435	0.19	-2.4
3,484,880	-	hutW	LU632_RS18435	0.19	-0.2
3,484,884	-	hutW	LU632_RS18435	0.19	+0.9
3,484,884	-	hutW	LU632_RS18435	0.19	+2.0
3,484,923	+	hutW	LU632_RS18435	0.22	+0.0
3,484,924	-	hutW	LU632_RS18435	0.22	-2.3
3,484,953	-	hutW	LU632_RS18435	0.24	+1.2
3,485,070	+	hutW	LU632_RS18435	0.33	+0.5
3,485,075	-	hutW	LU632_RS18435	0.34	+0.3
3,485,075	-	hutW	LU632_RS18435	0.34	+1.3
3,485,092	+	hutW	LU632_RS18435	0.35	-0.9
3,485,139	+	hutW	LU632_RS18435	0.39	+2.1
3,485,140	-	hutW	LU632_RS18435	0.39	+0.7
3,485,158	+	hutW	LU632_RS18435	0.40	+1.2
3,485,164	+	hutW	LU632_RS18435	0.40	-1.1
3,485,164	+	hutW	LU632_RS18435	0.40	-1.3
3,485,165	-	hutW	LU632_RS18435	0.41	-0.0
3,485,300	+	hutW	LU632_RS18435	0.51	-1.3
3,485,300	+	hutW	LU632_RS18435	0.51	-2.1
3,485,301	-	hutW	LU632_RS18435	0.51	-0.3
3,485,345	+	hutW	LU632_RS18435	0.54	-1.1
3,485,418	+	hutW	LU632_RS18435	0.60	-0.1
3,485,418	+	hutW	LU632_RS18435	0.60	-0.1