Strain Fitness in Erwinia tracheiphila SCR3 around LU632_RS18260

Experiment: Experiment:TE2, Cucumber 5 Petiole 1 (TE2-S-C5-P1)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Experiment:TE2, Cucumber 5 Petiole 1 (TE2-S-C5-P1)
3,447,999	-				-2.0
3,448,004	+				+1.9
3,448,206	+				-1.0
3,448,207	-				-2.7
3,448,281	+				+0.5
3,448,327	+				+0.9
3,448,328	-				+1.1
3,448,350	+				-0.4
3,448,350	+				-1.7
3,448,354	+				+1.5
3,448,354	+				-1.2
3,448,355	-				-0.3
3,448,370	-				-0.7
3,448,408	-		LU632_RS18255	0.15	+1.2
3,448,408	-		LU632_RS18255	0.15	-3.3
3,448,408	-		LU632_RS18255	0.15	-1.7
3,448,479	+		LU632_RS18255	0.36	+1.1
3,448,513	+		LU632_RS18255	0.45	-0.2
3,448,664	-				-1.2
3,448,850	+		LU632_RS18260	0.34	+0.9
3,448,871	+		LU632_RS18260	0.38	+1.9
3,448,872	-		LU632_RS18260	0.38	+1.1
3,448,901	+		LU632_RS18260	0.43	+0.5
3,448,901	+		LU632_RS18260	0.43	-0.7
3,448,901	+		LU632_RS18260	0.43	+1.4
3,449,019	+		LU632_RS18260	0.65	+1.7
3,449,020	-		LU632_RS18260	0.65	+1.8
3,449,020	-		LU632_RS18260	0.65	-0.1
3,449,065	+		LU632_RS18260	0.73	-0.1
3,449,066	-		LU632_RS18260	0.73	-0.8
3,449,157	-		LU632_RS18260	0.90	-2.3
3,449,193	-				+0.3
3,449,226	+				-0.3
3,449,226	+				+2.0
3,449,226	+				-0.7
3,449,227	-				+1.7
3,449,411	-				-0.5
3,449,416	-				+1.6
3,449,466	+				+0.2
3,449,467	-				-1.4
3,449,752	+		LU632_RS18265	0.33	-0.4
3,449,753	-		LU632_RS18265	0.33	+0.2
3,449,922	+		LU632_RS18265	0.53	+0.3
3,449,941	+		LU632_RS18265	0.56	-0.7
3,449,950	+		LU632_RS18265	0.57	+1.8
3,449,951	-		LU632_RS18265	0.57	+0.5
3,450,003	+		LU632_RS18265	0.63	-2.1
3,450,023	-		LU632_RS18265	0.65	+0.1
3,450,023	-		LU632_RS18265	0.65	+1.4
3,450,032	+		LU632_RS18265	0.66	+0.9
3,450,033	-		LU632_RS18265	0.67	-1.1
3,450,033	-		LU632_RS18265	0.67	-2.5
3,450,037	-		LU632_RS18265	0.67	-0.3
3,450,171	-		LU632_RS18265	0.83	-1.9
3,450,177	+		LU632_RS18265	0.84	-0.1
3,450,183	-		LU632_RS18265	0.84	+0.7