Strain Fitness in Erwinia tracheiphila SCR3 around LU632_RS18175

Experiment: Experiment:TE2, Cucumber 5 Petiole 1 (TE2-S-C5-P1)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Experiment:TE2, Cucumber 5 Petiole 1 (TE2-S-C5-P1)
3,433,273	+				-1.1
3,433,358	+		LU632_RS18165	0.23	+1.8
3,433,358	+		LU632_RS18165	0.23	+1.2
3,433,394	+		LU632_RS18165	0.34	-2.3
3,433,394	+		LU632_RS18165	0.34	-0.3
3,433,395	-		LU632_RS18165	0.35	+0.8
3,433,574	+		LU632_RS18165	0.88	+1.8
3,433,574	+		LU632_RS18165	0.88	+0.3
3,433,575	-		LU632_RS18165	0.89	-0.3
3,433,575	-		LU632_RS18165	0.89	+0.2
3,433,611	-				-0.3
3,433,696	+				+0.6
3,433,748	+				+1.9
3,433,748	+				-0.9
3,433,749	-				-1.2
3,433,751	-				+0.9
3,433,801	+	rsmS	LU632_RS18170	0.18	+1.2
3,433,801	+	rsmS	LU632_RS18170	0.18	+0.2
3,433,819	+	rsmS	LU632_RS18170	0.29	-0.3
3,433,819	+	rsmS	LU632_RS18170	0.29	+0.2
3,433,820	-	rsmS	LU632_RS18170	0.30	+0.1
3,433,894	-	rsmS	LU632_RS18170	0.78	+2.9
3,433,962	-				-2.6
3,433,966	+				-2.2
3,433,976	+				+0.2
3,434,069	-	acrR	LU632_RS18175	0.22	+0.5
3,434,121	-	acrR	LU632_RS18175	0.31	+0.5
3,434,155	-	acrR	LU632_RS18175	0.36	+0.5
3,434,166	+	acrR	LU632_RS18175	0.38	-1.8
3,434,166	+	acrR	LU632_RS18175	0.38	-3.1
3,434,167	-	acrR	LU632_RS18175	0.38	+1.6
3,434,167	-	acrR	LU632_RS18175	0.38	-1.7
3,434,167	-	acrR	LU632_RS18175	0.38	+0.2
3,434,167	-	acrR	LU632_RS18175	0.38	-0.3
3,434,168	+	acrR	LU632_RS18175	0.38	+1.1
3,434,168	+	acrR	LU632_RS18175	0.38	+0.1
3,434,168	+	acrR	LU632_RS18175	0.38	-2.6
3,434,168	+	acrR	LU632_RS18175	0.38	-2.2
3,434,168	+	acrR	LU632_RS18175	0.38	-1.5
3,434,169	+	acrR	LU632_RS18175	0.38	-0.4
3,434,169	-	acrR	LU632_RS18175	0.38	-2.7
3,434,169	-	acrR	LU632_RS18175	0.38	-2.4
3,434,169	-	acrR	LU632_RS18175	0.38	+0.5
3,434,169	-	acrR	LU632_RS18175	0.38	+0.3
3,434,169	-	acrR	LU632_RS18175	0.38	+0.6
3,434,221	+	acrR	LU632_RS18175	0.46	-0.2
3,434,230	+	acrR	LU632_RS18175	0.48	+0.7
3,434,381	+	acrR	LU632_RS18175	0.71	-2.4
3,434,382	-	acrR	LU632_RS18175	0.71	-2.3
3,434,480	+	acrR	LU632_RS18175	0.86	-0.0
3,434,481	-	acrR	LU632_RS18175	0.87	-0.5
3,434,518	+				-0.7
3,434,578	+				+2.1
3,434,594	+				+0.6
3,434,595	-				+0.3
3,434,599	-				+1.2
3,434,612	+				-0.6
3,434,613	-				+1.5
3,434,616	+				+2.1
3,434,630	+				+1.5
3,434,632	+				+0.4
3,434,632	+				-0.2
3,434,662	+				+0.9
3,434,663	-				+2.8