Strain Fitness in Erwinia tracheiphila SCR3 around LU632_RS18085

Experiment: Experiment:TE2, Cucumber 5 Petiole 1 (TE2-S-C5-P1)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Experiment:TE2, Cucumber 5 Petiole 1 (TE2-S-C5-P1)
3,416,209	+		LU632_RS18080	0.33	+4.4
3,416,209	+		LU632_RS18080	0.33	+1.2
3,416,210	-		LU632_RS18080	0.33	-2.7
3,416,210	-		LU632_RS18080	0.33	-1.7
3,416,211	+		LU632_RS18080	0.33	-0.7
3,416,211	+		LU632_RS18080	0.33	+2.5
3,416,211	+		LU632_RS18080	0.33	-0.9
3,416,211	+		LU632_RS18080	0.33	+1.1
3,416,212	-		LU632_RS18080	0.33	+0.1
3,416,212	-		LU632_RS18080	0.33	+0.0
3,416,212	-		LU632_RS18080	0.33	+0.4
3,416,212	-		LU632_RS18080	0.33	-3.0
3,416,233	+		LU632_RS18080	0.35	+0.9
3,416,240	+		LU632_RS18080	0.36	+1.3
3,416,340	-		LU632_RS18080	0.43	+0.9
3,416,389	+		LU632_RS18080	0.47	+1.2
3,416,389	+		LU632_RS18080	0.47	-0.1
3,416,391	+		LU632_RS18080	0.47	-0.4
3,416,392	-		LU632_RS18080	0.47	-0.6
3,416,392	-		LU632_RS18080	0.47	-0.5
3,416,392	-		LU632_RS18080	0.47	-0.8
3,416,392	-		LU632_RS18080	0.47	+0.4
3,416,510	+		LU632_RS18080	0.56	-0.7
3,416,588	-		LU632_RS18080	0.62	-0.7
3,416,588	-		LU632_RS18080	0.62	+0.9
3,416,628	-		LU632_RS18080	0.65	-1.9
3,416,652	+		LU632_RS18080	0.67	-1.0
3,416,653	-		LU632_RS18080	0.67	-0.7
3,416,653	-		LU632_RS18080	0.67	+0.4
3,416,782	+		LU632_RS18080	0.77	-0.4
3,416,790	-		LU632_RS18080	0.78	+0.4
3,416,870	-		LU632_RS18080	0.84	-1.2
3,416,981	+				-0.7
3,417,056	+				-0.2
3,417,056	+				-1.3
3,417,153	+				+1.8
3,417,153	+				-2.4
3,417,154	-				+1.2
3,417,154	-				-1.7
3,417,158	-				-2.4
3,417,158	-				-1.7
3,417,158	-				+0.2
3,417,158	-				-0.0
3,418,236	+				+0.6
3,418,280	-				-2.3
3,418,280	-				+0.9
3,418,280	-				-0.5
3,418,282	-				+0.1
3,418,282	-				+0.1