Strain Fitness in Erwinia tracheiphila SCR3 around LU632_RS17785

Experiment: Experiment:TE2, Cucumber 5 Petiole 1 (TE2-S-C5-P1)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Experiment:TE2, Cucumber 5 Petiole 1 (TE2-S-C5-P1)
3,349,265	-				+1.1
3,349,316	-				-0.2
3,349,349	+				-0.1
3,349,350	-				-0.1
3,349,504	-	bamB	LU632_RS17785	0.14	-1.4
3,349,519	+	bamB	LU632_RS17785	0.15	-2.4
3,349,628	-	bamB	LU632_RS17785	0.25	-1.4
3,349,702	-	bamB	LU632_RS17785	0.31	-0.1
3,349,727	+	bamB	LU632_RS17785	0.33	-1.1
3,349,729	+	bamB	LU632_RS17785	0.33	-0.5
3,349,729	+	bamB	LU632_RS17785	0.33	-1.4
3,349,730	-	bamB	LU632_RS17785	0.33	-1.1
3,349,741	+	bamB	LU632_RS17785	0.34	-1.7
3,349,950	+	bamB	LU632_RS17785	0.52	-2.3
3,349,950	+	bamB	LU632_RS17785	0.52	+1.9
3,349,951	-	bamB	LU632_RS17785	0.52	-3.1
3,349,951	-	bamB	LU632_RS17785	0.52	-1.4
3,349,963	-	bamB	LU632_RS17785	0.53	-1.1
3,350,021	+	bamB	LU632_RS17785	0.58	-2.4
3,350,022	-	bamB	LU632_RS17785	0.58	-0.1
3,350,022	-	bamB	LU632_RS17785	0.58	-1.1
3,350,022	-	bamB	LU632_RS17785	0.58	-2.1
3,350,025	+	bamB	LU632_RS17785	0.58	-0.1
3,350,026	-	bamB	LU632_RS17785	0.58	-0.1
3,350,026	-	bamB	LU632_RS17785	0.58	-3.1
3,350,268	+	bamB	LU632_RS17785	0.79	-0.7
3,350,502	+				-1.9
3,350,546	+				-0.7
3,350,773	+		LU632_RS17790	0.33	-1.1
3,350,875	+		LU632_RS17790	0.50	-1.1
3,350,876	-		LU632_RS17790	0.50	-0.4
3,350,930	+		LU632_RS17790	0.59	-0.7
3,350,931	-		LU632_RS17790	0.59	+0.2
3,350,991	+		LU632_RS17790	0.68	+0.9
3,351,175	-				-0.1
3,351,177	-				-0.7