Strain Fitness in Erwinia tracheiphila SCR3 around LU632_RS17590

Experiment: Experiment:TE2, Cucumber 5 Petiole 1 (TE2-S-C5-P1)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Experiment:TE2, Cucumber 5 Petiole 1 (TE2-S-C5-P1)
3,303,445	+	yejF	LU632_RS17580	0.82	+0.7
3,303,446	-	yejF	LU632_RS17580	0.82	+0.9
3,303,446	-	yejF	LU632_RS17580	0.82	-3.2
3,303,446	-	yejF	LU632_RS17580	0.82	+0.5
3,303,446	-	yejF	LU632_RS17580	0.82	+1.4
3,303,446	-	yejF	LU632_RS17580	0.82	+0.6
3,303,450	-	yejF	LU632_RS17580	0.82	+2.1
3,303,464	+	yejF	LU632_RS17580	0.83	+0.9
3,303,540	-	yejF	LU632_RS17580	0.88	-2.1
3,303,579	+				-1.7
3,303,607	+				-0.1
3,303,607	+				+0.9
3,303,640	+				+0.9
3,303,641	-				-3.4
3,303,641	-				-1.9
3,303,708	-				-0.9
3,303,727	+				-0.9
3,303,977	-		LU632_RS17585	0.64	-1.4
3,304,092	+				-1.1
3,304,092	+				-1.9
3,304,092	+				-0.6
3,304,093	-				-2.6
3,304,116	+				-0.0
3,304,117	-				+0.2
3,304,117	-				+0.3
3,304,197	-				+0.4
3,304,230	-				+1.4
3,304,327	+				-0.6
3,304,425	+				-2.3
3,304,425	+				+2.1
3,304,426	-				-0.6
3,304,429	+				-1.4
3,304,429	+				-0.9
3,304,429	+				+1.7
3,304,430	-				+1.3
3,304,611	-		LU632_RS17590	0.21	+0.0
3,304,718	-		LU632_RS17590	0.30	-0.7
3,304,718	-		LU632_RS17590	0.30	-2.6
3,304,718	-		LU632_RS17590	0.30	+0.6
3,304,796	+		LU632_RS17590	0.37	-0.1
3,304,819	+		LU632_RS17590	0.39	-3.1
3,304,820	-		LU632_RS17590	0.39	-0.9
3,304,821	+		LU632_RS17590	0.39	+0.9
3,304,838	+		LU632_RS17590	0.40	+1.6
3,304,839	-		LU632_RS17590	0.40	+1.9
3,304,839	-		LU632_RS17590	0.40	-0.1
3,304,902	+		LU632_RS17590	0.46	-0.2
3,304,902	+		LU632_RS17590	0.46	-0.1
3,304,902	+		LU632_RS17590	0.46	-3.2
3,304,903	-		LU632_RS17590	0.46	-0.2
3,304,903	-		LU632_RS17590	0.46	+1.1
3,304,904	+		LU632_RS17590	0.46	+0.9
3,304,904	+		LU632_RS17590	0.46	-2.7
3,304,905	-		LU632_RS17590	0.46	+0.8
3,305,142	+		LU632_RS17590	0.66	+0.7
3,305,143	-		LU632_RS17590	0.66	+0.2
3,305,178	-		LU632_RS17590	0.69	-0.2
3,305,247	+		LU632_RS17590	0.75	-1.4
3,305,247	+		LU632_RS17590	0.75	-1.7
3,305,364	-		LU632_RS17590	0.85	-1.9
3,305,369	-		LU632_RS17590	0.85	+1.9
3,305,396	+		LU632_RS17590	0.87	-1.1
3,305,416	+		LU632_RS17590	0.89	-0.1
3,305,471	+				-0.3
3,305,471	+				-0.9
3,305,471	+				+1.3
3,305,471	+				-0.0
3,305,471	+				+0.2
3,305,472	-				-0.6
3,305,472	-				-0.7
3,305,472	-				+0.9
3,305,472	-				-1.3
3,305,475	+				+1.5
3,305,475	+				-1.4
3,305,475	+				-0.2
3,305,475	+				-0.1
3,305,475	+				-1.6
3,305,476	-				-2.4
3,305,476	-				+0.7
3,305,476	-				+0.2
3,305,476	-				+1.6
3,305,570	-				-0.4
3,305,690	+	rsuA	LU632_RS17595	0.18	-0.7
3,305,690	+	rsuA	LU632_RS17595	0.18	-0.1
3,305,691	-	rsuA	LU632_RS17595	0.18	+0.7
3,305,691	-	rsuA	LU632_RS17595	0.18	+0.3
3,305,700	-	rsuA	LU632_RS17595	0.19	+0.7
3,305,725	+	rsuA	LU632_RS17595	0.22	+3.6
3,305,726	-	rsuA	LU632_RS17595	0.23	+0.9
3,305,726	-	rsuA	LU632_RS17595	0.23	+2.2
3,305,726	-	rsuA	LU632_RS17595	0.23	+3.1
3,305,726	-	rsuA	LU632_RS17595	0.23	+0.6
3,305,743	-	rsuA	LU632_RS17595	0.25	+0.9
3,305,759	-	rsuA	LU632_RS17595	0.27	+1.4
3,305,825	-	rsuA	LU632_RS17595	0.36	+1.1
3,306,019	+	rsuA	LU632_RS17595	0.63	+0.1
3,306,100	+	rsuA	LU632_RS17595	0.74	+1.7
3,306,101	-	rsuA	LU632_RS17595	0.74	+0.9
3,306,101	-	rsuA	LU632_RS17595	0.74	+2.1
3,306,144	+	rsuA	LU632_RS17595	0.80	+1.4
3,306,144	+	rsuA	LU632_RS17595	0.80	-1.3
3,306,224	+				-1.4
3,306,224	+				-0.7
3,306,224	+				-1.4
3,306,225	-				+0.2
3,306,377	+				+0.5
3,306,399	+				-1.1
3,306,399	+				-0.4
3,306,399	+				+1.3
3,306,399	+				-0.1
3,306,400	-				+3.1
3,306,401	+				-0.3
3,306,461	-				+1.4
3,306,461	-				-1.0
3,306,461	-				-1.1
3,306,505	-				+2.0
3,306,510	-				+0.6
3,306,540	+				-1.7
3,306,541	-				+0.0