Strain Fitness in Erwinia tracheiphila SCR3 around LU632_RS17390

Experiment: Experiment:TE2, Cucumber 5 Petiole 1 (TE2-S-C5-P1)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Experiment:TE2, Cucumber 5 Petiole 1 (TE2-S-C5-P1)
3,266,954	-				-0.1
3,266,957	+				-0.3
3,266,957	+				-3.4
3,266,976	+				+1.2
3,266,976	+				-2.0
3,266,983	-				+2.2
3,266,983	-				+1.7
3,266,999	+				+0.8
3,267,077	-		LU632_RS17380	0.17	+0.5
3,267,225	+		LU632_RS17380	0.58	-0.1
3,267,226	-		LU632_RS17380	0.59	-2.1
3,267,226	-		LU632_RS17380	0.59	-0.2
3,267,227	+		LU632_RS17380	0.59	-1.4
3,267,228	-		LU632_RS17380	0.59	+0.3
3,267,228	-		LU632_RS17380	0.59	+2.0
3,267,228	-		LU632_RS17380	0.59	+0.4
3,267,228	-		LU632_RS17380	0.59	+2.5
3,267,248	-		LU632_RS17380	0.65	-2.4
3,267,291	+		LU632_RS17380	0.77	+0.3
3,267,291	+		LU632_RS17380	0.77	-2.1
3,267,291	+		LU632_RS17380	0.77	-0.8
3,267,292	-		LU632_RS17380	0.77	+0.6
3,267,326	-		LU632_RS17380	0.87	+2.3
3,267,377	+				-0.3
3,267,398	+				+1.0
3,267,399	-				+0.8
3,267,419	+				-0.2
3,267,420	-				-2.5
3,267,422	-				-2.7
3,267,525	-				-0.3
3,267,604	+				+0.7
3,267,649	+		LU632_RS17385	0.11	+2.7
3,267,692	-		LU632_RS17385	0.26	+0.6
3,267,692	-		LU632_RS17385	0.26	-2.1
3,267,747	-		LU632_RS17385	0.45	-2.6
3,267,795	-		LU632_RS17385	0.62	+1.0
3,267,833	-		LU632_RS17385	0.75	-0.1
3,267,834	+		LU632_RS17385	0.76	-1.4
3,267,880	-				-1.0
3,267,937	+				+0.9
3,267,947	-				-0.4
3,267,973	+				+0.2
3,268,120	-		LU632_RS17390	0.30	-0.8
3,268,231	-		LU632_RS17390	0.45	+2.1
3,268,277	+		LU632_RS17390	0.52	+3.0
3,268,413	-		LU632_RS17390	0.70	+2.0
3,268,427	+		LU632_RS17390	0.72	+1.5
3,268,490	+		LU632_RS17390	0.81	+1.7
3,268,535	+		LU632_RS17390	0.87	+0.5
3,268,550	+		LU632_RS17390	0.89	+0.8
3,268,551	-		LU632_RS17390	0.89	-2.4
3,268,645	-				+1.7
3,268,934	+				+1.9
3,268,938	+				-2.4
3,268,938	+				-1.1
3,268,939	-				+1.7
3,269,002	+				-0.6
3,269,014	+				+0.8
3,269,015	-				-1.7
3,269,015	-				+0.8
3,269,015	-				-0.1
3,269,039	+				+0.3
3,269,040	-				-0.4
3,269,044	+				-0.7
3,269,044	+				+1.4
3,269,048	+				-3.2
3,269,073	+		LU632_RS17395	0.11	-1.7
3,269,355	-		LU632_RS17395	0.40	+1.1
3,269,428	+		LU632_RS17395	0.48	-0.0
3,269,493	-		LU632_RS17395	0.55	-2.1
3,269,612	-		LU632_RS17395	0.67	+0.2
3,269,612	-		LU632_RS17395	0.67	-2.4
3,269,612	-		LU632_RS17395	0.67	-0.1