Strain Fitness in Erwinia tracheiphila SCR3 around LU632_RS17120

Experiment: Experiment:TE2, Cucumber 5 Petiole 1 (TE2-S-C5-P1)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Experiment:TE2, Cucumber 5 Petiole 1 (TE2-S-C5-P1)
3,223,023	+		LU632_RS17110	0.70	-1.0
3,223,100	-		LU632_RS17110	0.74	-0.1
3,223,182	+		LU632_RS17110	0.78	-1.1
3,223,190	+		LU632_RS17110	0.78	+0.3
3,223,190	+		LU632_RS17110	0.78	-0.1
3,223,257	+		LU632_RS17110	0.82	-1.4
3,223,258	-		LU632_RS17110	0.82	-0.3
3,223,286	-		LU632_RS17110	0.84	+1.9
3,223,395	-		LU632_RS17110	0.89	+0.2
3,223,395	-		LU632_RS17110	0.89	+1.0
3,223,433	+				+1.3
3,223,636	-				-1.2
3,223,637	+				+2.8
3,223,700	+				-1.4
3,223,844	+		LU632_RS17115	0.43	-0.3
3,223,931	+		LU632_RS17115	0.71	+0.0
3,224,021	+				+1.6
3,224,021	+				+1.3
3,224,021	+				-0.1
3,224,190	+		LU632_RS17120	0.47	+0.9
3,224,234	+		LU632_RS17120	0.59	+3.2
3,224,235	-		LU632_RS17120	0.60	+2.2
3,224,325	+		LU632_RS17120	0.85	-1.2
3,224,325	+		LU632_RS17120	0.85	+1.5
3,224,325	+		LU632_RS17120	0.85	+0.5
3,224,326	-		LU632_RS17120	0.85	+1.5
3,224,379	+				-1.4
3,224,380	-				+1.1
3,224,615	-		LU632_RS17125	0.15	+1.1
3,224,711	+		LU632_RS17125	0.21	+1.5
3,224,711	+		LU632_RS17125	0.21	+0.6
3,224,744	+		LU632_RS17125	0.23	+1.3
3,224,744	+		LU632_RS17125	0.23	-0.1
3,224,744	+		LU632_RS17125	0.23	+0.4
3,224,744	+		LU632_RS17125	0.23	-0.1
3,224,765	+		LU632_RS17125	0.24	+1.4
3,224,780	+		LU632_RS17125	0.25	-0.0
3,224,915	-		LU632_RS17125	0.34	-1.7
3,225,017	+		LU632_RS17125	0.41	+1.5
3,225,017	+		LU632_RS17125	0.41	+0.4
3,225,018	-		LU632_RS17125	0.41	-0.2
3,225,018	-		LU632_RS17125	0.41	-2.7
3,225,018	-		LU632_RS17125	0.41	+0.0
3,225,080	+		LU632_RS17125	0.45	+1.4
3,225,080	+		LU632_RS17125	0.45	-0.5
3,225,080	+		LU632_RS17125	0.45	+1.3
3,225,081	-		LU632_RS17125	0.45	+0.5
3,225,081	-		LU632_RS17125	0.45	+1.4
3,225,095	+		LU632_RS17125	0.46	-1.1
3,225,099	+		LU632_RS17125	0.46	+2.2
3,225,100	-		LU632_RS17125	0.46	-0.3
3,225,103	+		LU632_RS17125	0.46	+0.6
3,225,104	-		LU632_RS17125	0.47	-2.1
3,225,104	-		LU632_RS17125	0.47	-1.1