Strain Fitness in Erwinia tracheiphila SCR3 around LU632_RS16680

Experiment: Experiment:TE2, Cucumber 5 Petiole 1 (TE2-S-C5-P1)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Experiment:TE2, Cucumber 5 Petiole 1 (TE2-S-C5-P1)
3,148,273	-				+3.4
3,148,310	+				-1.1
3,148,311	-				+1.1
3,148,523	-		LU632_RS16665	0.76	+1.2
3,148,613	-				+0.9
3,148,673	-				-1.5
3,148,676	+				+0.3
3,148,676	+				+0.3
3,148,827	+		LU632_RS16670	0.67	+1.0
3,148,926	+				-0.3
3,148,927	-				+0.5
3,148,993	+				+0.9
3,148,993	+				-1.1
3,148,994	-				+1.8
3,148,995	+				+0.6
3,149,015	-		LU632_RS16675	0.16	-1.9
3,149,029	+		LU632_RS16675	0.21	-0.5
3,149,126	+		LU632_RS16675	0.60	+1.0
3,149,127	-		LU632_RS16675	0.61	-1.6
3,149,150	+		LU632_RS16675	0.70	-0.4
3,149,207	-				-3.0
3,149,319	-		LU632_RS16680	0.43	+1.6
3,149,416	-		LU632_RS16680	0.86	-0.2
3,149,427	+				-1.5
3,149,427	+				-3.4
3,149,428	-				+0.5
3,149,428	-				+2.4
3,149,446	+				-0.6
3,149,447	-				+1.4
3,149,495	+		LU632_RS16685	0.11	-1.5
3,149,495	+		LU632_RS16685	0.11	-0.7
3,149,496	-		LU632_RS16685	0.11	-2.1
3,149,550	-		LU632_RS16685	0.20	+0.8
3,149,564	+		LU632_RS16685	0.23	-2.0
3,149,565	-		LU632_RS16685	0.23	+0.8
3,149,757	+		LU632_RS16685	0.55	-2.3
3,149,757	+		LU632_RS16685	0.55	+1.4
3,149,757	+		LU632_RS16685	0.55	-0.7
3,149,761	+		LU632_RS16685	0.56	+0.2
3,149,880	-		LU632_RS16685	0.76	-1.7
3,149,924	-		LU632_RS16685	0.83	-2.2
3,149,924	-		LU632_RS16685	0.83	+0.5
3,149,925	+		LU632_RS16685	0.83	+1.0
3,149,927	+		LU632_RS16685	0.84	+0.5
3,149,983	+				-0.7
3,150,028	+				+0.2
3,150,029	-				-1.0
3,150,055	-				-0.2
3,150,097	-		LU632_RS16690	0.18	+1.3
3,150,097	-		LU632_RS16690	0.18	-1.2
3,150,097	-		LU632_RS16690	0.18	+0.1
3,150,102	+		LU632_RS16690	0.19	+2.0
3,150,128	+		LU632_RS16690	0.25	+1.9
3,150,208	+		LU632_RS16690	0.44	+0.8
3,150,209	-		LU632_RS16690	0.44	-0.2
3,150,209	-		LU632_RS16690	0.44	-2.0
3,150,209	-		LU632_RS16690	0.44	+1.0
3,150,209	-		LU632_RS16690	0.44	-0.6
3,150,233	-		LU632_RS16690	0.50	-4.0
3,150,242	-		LU632_RS16690	0.52	+0.8
3,150,279	+		LU632_RS16690	0.61	+4.6
3,150,279	+		LU632_RS16690	0.61	+1.3
3,150,325	-		LU632_RS16690	0.72	+0.0
3,150,412	-				+0.6