Experiment: Experiment:TE2, Cucumber 5 Petiole 1 (TE2-S-C5-P1)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt LU632_RS16655 and LU632_RS16660 are separated by 60 nucleotides LU632_RS16660 and LU632_RS16665 overlap by 4 nucleotides LU632_RS16665 and LU632_RS16670 are separated by 84 nucleotides LU632_RS16670 and LU632_RS16675 are separated by 68 nucleotides LU632_RS16675 and LU632_RS16680 overlap by 4 nucleotides LU632_RS16680 and LU632_RS16685 overlap by 19 nucleotides
LU632_RS16655: LU632_RS16655 - IS3 family transposase, at 3,146,376 to 3,147,496
_RS16655
LU632_RS16660: LU632_RS16660 - DNA-binding protein, at 3,147,557 to 3,148,347
_RS16660
LU632_RS16665: LU632_RS16665 - hypothetical protein, at 3,148,344 to 3,148,577
_RS16665
LU632_RS16670: LU632_RS16670 - hypothetical protein, at 3,148,662 to 3,148,907
_RS16670
LU632_RS16675: LU632_RS16675 - hypothetical protein, at 3,148,976 to 3,149,224
_RS16675
LU632_RS16680: LU632_RS16680 - hypothetical protein, at 3,149,221 to 3,149,448
_RS16680
LU632_RS16685: LU632_RS16685 - HNH endonuclease, at 3,149,430 to 3,150,023
_RS16685
Position (kb) 3148
3149 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 3147.508 kb on + strand at 3147.576 kb on + strand at 3147.576 kb on + strand at 3147.577 kb on - strand at 3147.580 kb on + strand at 3147.581 kb on - strand at 3147.706 kb on + strand, within LU632_RS16660 at 3147.709 kb on - strand, within LU632_RS16660 at 3147.709 kb on - strand, within LU632_RS16660 at 3147.710 kb on + strand, within LU632_RS16660 at 3147.710 kb on + strand, within LU632_RS16660 at 3147.747 kb on + strand, within LU632_RS16660 at 3147.829 kb on - strand, within LU632_RS16660 at 3147.905 kb on + strand, within LU632_RS16660 at 3147.935 kb on + strand, within LU632_RS16660 at 3147.997 kb on - strand, within LU632_RS16660 at 3148.032 kb on + strand, within LU632_RS16660 at 3148.032 kb on + strand, within LU632_RS16660 at 3148.103 kb on + strand, within LU632_RS16660 at 3148.273 kb on - strand at 3148.310 kb on + strand at 3148.311 kb on - strand at 3148.523 kb on - strand, within LU632_RS16665 at 3148.613 kb on - strand at 3148.673 kb on - strand at 3148.676 kb on + strand at 3148.676 kb on + strand at 3148.827 kb on + strand, within LU632_RS16670 at 3148.926 kb on + strand at 3148.927 kb on - strand at 3148.993 kb on + strand at 3148.993 kb on + strand at 3148.994 kb on - strand at 3148.995 kb on + strand at 3149.015 kb on - strand, within LU632_RS16675 at 3149.029 kb on + strand, within LU632_RS16675 at 3149.126 kb on + strand, within LU632_RS16675 at 3149.127 kb on - strand, within LU632_RS16675 at 3149.150 kb on + strand, within LU632_RS16675 at 3149.207 kb on - strand at 3149.319 kb on - strand, within LU632_RS16680 at 3149.416 kb on - strand, within LU632_RS16680 at 3149.427 kb on + strand at 3149.427 kb on + strand at 3149.428 kb on - strand at 3149.428 kb on - strand at 3149.446 kb on + strand at 3149.447 kb on - strand at 3149.495 kb on + strand, within LU632_RS16685 at 3149.495 kb on + strand, within LU632_RS16685 at 3149.496 kb on - strand, within LU632_RS16685 at 3149.550 kb on - strand, within LU632_RS16685 at 3149.564 kb on + strand, within LU632_RS16685 at 3149.565 kb on - strand, within LU632_RS16685
Per-strain Table
Position Strand Gene LocusTag Fraction Experiment:TE2, Cucumber 5 Petiole 1 (TE2-S-C5-P1) remove 3,147,508 + -0.4 3,147,576 + +0.7 3,147,576 + +2.8 3,147,577 - -1.9 3,147,580 + +0.0 3,147,581 - -0.7 3,147,706 + LU632_RS16660 0.19 +2.8 3,147,709 - LU632_RS16660 0.19 +0.4 3,147,709 - LU632_RS16660 0.19 -0.3 3,147,710 + LU632_RS16660 0.19 -0.2 3,147,710 + LU632_RS16660 0.19 -0.7 3,147,747 + LU632_RS16660 0.24 -0.2 3,147,829 - LU632_RS16660 0.34 -0.3 3,147,905 + LU632_RS16660 0.44 +2.0 3,147,935 + LU632_RS16660 0.48 -1.2 3,147,997 - LU632_RS16660 0.56 -0.8 3,148,032 + LU632_RS16660 0.60 +0.9 3,148,032 + LU632_RS16660 0.60 +2.3 3,148,103 + LU632_RS16660 0.69 +0.0 3,148,273 - +3.4 3,148,310 + -1.1 3,148,311 - +1.1 3,148,523 - LU632_RS16665 0.76 +1.2 3,148,613 - +0.9 3,148,673 - -1.5 3,148,676 + +0.3 3,148,676 + +0.3 3,148,827 + LU632_RS16670 0.67 +1.0 3,148,926 + -0.3 3,148,927 - +0.5 3,148,993 + +0.9 3,148,993 + -1.1 3,148,994 - +1.8 3,148,995 + +0.6 3,149,015 - LU632_RS16675 0.16 -1.9 3,149,029 + LU632_RS16675 0.21 -0.5 3,149,126 + LU632_RS16675 0.60 +1.0 3,149,127 - LU632_RS16675 0.61 -1.6 3,149,150 + LU632_RS16675 0.70 -0.4 3,149,207 - -3.0 3,149,319 - LU632_RS16680 0.43 +1.6 3,149,416 - LU632_RS16680 0.86 -0.2 3,149,427 + -1.5 3,149,427 + -3.4 3,149,428 - +0.5 3,149,428 - +2.4 3,149,446 + -0.6 3,149,447 - +1.4 3,149,495 + LU632_RS16685 0.11 -1.5 3,149,495 + LU632_RS16685 0.11 -0.7 3,149,496 - LU632_RS16685 0.11 -2.1 3,149,550 - LU632_RS16685 0.20 +0.8 3,149,564 + LU632_RS16685 0.23 -2.0 3,149,565 - LU632_RS16685 0.23 +0.8
Or see this region's nucleotide sequence