Strain Fitness in Erwinia tracheiphila SCR3 around LU632_RS16320

Experiment: Experiment:TE2, Cucumber 5 Petiole 1 (TE2-S-C5-P1)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Experiment:TE2, Cucumber 5 Petiole 1 (TE2-S-C5-P1)
3,086,276	+		LU632_RS16310	0.64	-0.8
3,086,276	+		LU632_RS16310	0.64	+0.5
3,086,277	-		LU632_RS16310	0.64	-1.3
3,086,279	-		LU632_RS16310	0.64	-1.2
3,086,279	-		LU632_RS16310	0.64	-0.2
3,086,628	+				-1.2
3,086,638	+				+0.8
3,087,183	+				-2.0
3,087,187	+				+0.4
3,087,187	+				+0.1
3,087,329	+	corC	LU632_RS16320	0.13	+0.1
3,087,335	+	corC	LU632_RS16320	0.13	+0.8
3,087,561	+	corC	LU632_RS16320	0.39	+1.4
3,087,581	+	corC	LU632_RS16320	0.41	+0.4
3,087,581	+	corC	LU632_RS16320	0.41	+1.8
3,087,615	+	corC	LU632_RS16320	0.45	-2.6
3,087,615	+	corC	LU632_RS16320	0.45	+1.2
3,087,708	+	corC	LU632_RS16320	0.56	+0.0
3,087,722	+	corC	LU632_RS16320	0.57	+1.1
3,087,802	+	corC	LU632_RS16320	0.67	-0.2
3,087,850	+	corC	LU632_RS16320	0.72	-1.5
3,087,852	+	corC	LU632_RS16320	0.72	-0.5
3,087,930	+	corC	LU632_RS16320	0.81	+0.6
3,087,930	+	corC	LU632_RS16320	0.81	-0.4
3,087,930	+	corC	LU632_RS16320	0.81	+0.8
3,088,035	+				+1.3
3,088,038	+				+0.5
3,088,038	+				+0.5
3,088,040	+				+2.4