Strain Fitness in Erwinia tracheiphila SCR3 around LU632_RS16220

Experiment: Experiment:TE2, Cucumber 5 Petiole 1 (TE2-S-C5-P1)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Experiment:TE2, Cucumber 5 Petiole 1 (TE2-S-C5-P1)
3,064,808	+				+0.1
3,064,808	+				+1.9
3,064,808	+				-2.5
3,064,808	+				-1.0
3,064,812	-				-0.7
3,064,882	+				+1.2
3,064,882	+				-0.1
3,064,882	+				+0.8
3,064,883	-				-1.1
3,064,883	-				+0.7
3,064,888	+				-2.5
3,064,888	+				-1.7
3,065,090	-		LU632_RS16210	0.87	+1.1
3,065,125	+				+1.1
3,065,126	+				+0.6
3,065,127	-				+0.3
3,065,130	+				+2.8
3,065,159	+				-0.2
3,065,182	+				-3.4
3,065,196	+				+0.4
3,065,197	-				-0.4
3,065,197	-				-2.2
3,065,259	-				+0.2
3,065,329	-		LU632_RS16215	0.14	+0.0
3,065,372	-		LU632_RS16215	0.21	-0.6
3,065,402	+		LU632_RS16215	0.27	-3.0
3,065,451	+		LU632_RS16215	0.36	-2.2
3,065,488	-		LU632_RS16215	0.42	+1.4
3,065,610	-		LU632_RS16215	0.64	-0.5
3,065,632	-		LU632_RS16215	0.68	+1.1
3,065,656	-		LU632_RS16215	0.73	+0.5
3,065,730	-		LU632_RS16215	0.86	+0.9
3,065,733	+		LU632_RS16215	0.86	+1.9
3,065,734	-		LU632_RS16215	0.87	+2.0
3,065,847	+				+1.3
3,065,847	+				+0.4
3,065,847	+				-0.2
3,065,848	-				+0.9
3,065,931	+				+0.6
3,066,077	+		LU632_RS16220	0.11	+0.7
3,066,078	-		LU632_RS16220	0.11	-0.9
3,066,097	-		LU632_RS16220	0.12	-0.6
3,066,185	+		LU632_RS16220	0.16	+0.2
3,066,186	-		LU632_RS16220	0.16	+1.2
3,066,186	-		LU632_RS16220	0.16	-0.6
3,066,186	-		LU632_RS16220	0.16	-2.0
3,066,186	-		LU632_RS16220	0.16	+0.1
3,066,286	-		LU632_RS16220	0.19	-2.2
3,066,380	+		LU632_RS16220	0.23	-0.2
3,066,423	+		LU632_RS16220	0.24	-0.7
3,066,425	+		LU632_RS16220	0.25	-0.8
3,066,426	-		LU632_RS16220	0.25	-1.8
3,066,426	-		LU632_RS16220	0.25	-0.2
3,066,426	-		LU632_RS16220	0.25	+1.4
3,066,426	-		LU632_RS16220	0.25	+0.8
3,066,426	-		LU632_RS16220	0.25	+0.7
3,066,432	-		LU632_RS16220	0.25	+1.2
3,066,458	+		LU632_RS16220	0.26	-2.0
3,066,547	+		LU632_RS16220	0.29	+0.8
3,066,548	-		LU632_RS16220	0.29	+1.7
3,066,548	-		LU632_RS16220	0.29	-2.2
3,066,645	-		LU632_RS16220	0.33	+0.2
3,066,670	+		LU632_RS16220	0.34	-0.4
3,066,738	+		LU632_RS16220	0.36	-2.0
3,066,769	-		LU632_RS16220	0.38	-0.2
3,066,944	+		LU632_RS16220	0.44	-1.8
3,066,945	-		LU632_RS16220	0.44	+0.7
3,066,947	-		LU632_RS16220	0.44	-0.2
3,066,947	-		LU632_RS16220	0.44	+0.8
3,066,952	+		LU632_RS16220	0.44	+0.8
3,066,995	+		LU632_RS16220	0.46	+0.9
3,067,039	-		LU632_RS16220	0.48	+1.3
3,067,040	+		LU632_RS16220	0.48	+0.8
3,067,127	+		LU632_RS16220	0.51	+0.4
3,067,176	+		LU632_RS16220	0.53	+0.5
3,067,179	+		LU632_RS16220	0.53	+0.8
3,067,348	+		LU632_RS16220	0.59	-0.7
3,067,349	-		LU632_RS16220	0.59	-1.2
3,067,349	-		LU632_RS16220	0.59	+1.3
3,067,511	+		LU632_RS16220	0.65	+0.1
3,067,532	+		LU632_RS16220	0.66	-0.8
3,067,567	+		LU632_RS16220	0.68	+1.7
3,067,612	-		LU632_RS16220	0.69	+0.4
3,067,768	+		LU632_RS16220	0.75	+2.7
3,067,769	-		LU632_RS16220	0.75	+1.3
3,067,802	-		LU632_RS16220	0.76	+1.0
3,067,802	-		LU632_RS16220	0.76	+0.2
3,067,826	-		LU632_RS16220	0.77	-0.8
3,067,864	+		LU632_RS16220	0.79	+0.8
3,067,954	-		LU632_RS16220	0.82	-0.3
3,067,999	+		LU632_RS16220	0.84	+0.4
3,067,999	+		LU632_RS16220	0.84	+0.0
3,068,116	-		LU632_RS16220	0.88	+0.8
3,068,172	+				+0.1
3,068,172	+				+1.1
3,068,172	+				-3.0
3,068,172	+				+0.8
3,068,172	+				+2.1
3,068,173	-				-0.8
3,068,174	+				-0.1
3,068,175	-				-0.1
3,068,175	-				-0.0
3,068,175	-				+0.6
3,068,175	-				+1.9
3,068,175	-				+1.4
3,068,310	+				-0.2
3,068,397	+				+1.2
3,068,401	+				+1.8
3,068,401	+				+1.3
3,068,401	+				-0.6
3,068,402	-				+0.8
3,068,402	-				+1.8
3,068,403	+				+1.7
3,068,629	-				-0.1
3,068,629	-				-2.2
3,068,630	+				-2.2
3,068,631	-				+0.7
3,068,631	-				-2.9
3,068,631	-				-0.9
3,068,785	-				-2.5
3,068,842	-		LU632_RS16230	0.12	-1.8
3,068,842	-		LU632_RS16230	0.12	+0.8
3,068,852	+		LU632_RS16230	0.12	+0.2
3,068,934	+		LU632_RS16230	0.18	+0.9
3,068,934	+		LU632_RS16230	0.18	-0.0
3,068,934	+		LU632_RS16230	0.18	-2.6
3,068,935	-		LU632_RS16230	0.18	+0.3
3,068,935	-		LU632_RS16230	0.18	+1.3
3,069,048	-		LU632_RS16230	0.26	+1.6
3,069,065	-		LU632_RS16230	0.28	-0.2
3,069,088	+		LU632_RS16230	0.29	-1.6
3,069,217	+		LU632_RS16230	0.38	+0.4
3,069,217	+		LU632_RS16230	0.38	+0.9
3,069,221	-		LU632_RS16230	0.39	-1.3
3,069,221	-		LU632_RS16230	0.39	+0.7
3,069,224	-		LU632_RS16230	0.39	+1.0
3,069,244	+		LU632_RS16230	0.40	+0.4
3,069,311	+		LU632_RS16230	0.45	+3.4
3,069,325	-		LU632_RS16230	0.46	+0.3
3,069,365	+		LU632_RS16230	0.49	+0.6