Strain Fitness in Erwinia tracheiphila SCR3 around LU632_RS16090

Experiment: Experiment:TE2, Cucumber 5 Petiole 1 (TE2-S-C5-P1)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Experiment:TE2, Cucumber 5 Petiole 1 (TE2-S-C5-P1)
3,039,596	-				-2.8
3,039,682	-				-2.9
3,039,695	-				-2.5
3,039,749	-				-2.5
3,039,871	-	odhB	LU632_RS16090	0.19	-2.0
3,039,871	-	odhB	LU632_RS16090	0.19	-1.2
3,040,227	-	odhB	LU632_RS16090	0.48	-2.0
3,040,482	-	odhB	LU632_RS16090	0.69	+0.8
3,040,482	-	odhB	LU632_RS16090	0.69	-0.8
3,040,842	-				-0.2
3,040,931	-				+0.8
3,040,931	-				-3.4
3,040,938	-				-1.2
3,040,977	-				-2.7
3,041,076	-				-2.2
3,041,076	-				-1.2
3,041,197	-	sucA	LU632_RS16095	0.12	-0.8
3,041,758	-	sucA	LU632_RS16095	0.32	+0.8
3,041,758	-	sucA	LU632_RS16095	0.32	+0.8