Strain Fitness in Erwinia tracheiphila SCR3 around LU632_RS15705

Experiment: Experiment:TE2, Cucumber 5 Petiole 1 (TE2-S-C5-P1)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Experiment:TE2, Cucumber 5 Petiole 1 (TE2-S-C5-P1)
2,972,395	+		LU632_RS15695	0.57	-0.1
2,972,398	+		LU632_RS15695	0.57	-1.1
2,972,398	+		LU632_RS15695	0.57	+1.8
2,972,399	-		LU632_RS15695	0.58	-0.1
2,972,399	-		LU632_RS15695	0.58	+0.4
2,972,471	+		LU632_RS15695	0.75	+1.1
2,972,471	+		LU632_RS15695	0.75	-0.2
2,972,472	-		LU632_RS15695	0.75	-1.4
2,972,472	-		LU632_RS15695	0.75	-2.8
2,972,472	-		LU632_RS15695	0.75	+1.2
2,972,473	+		LU632_RS15695	0.76	+0.3
2,972,474	-		LU632_RS15695	0.76	-0.6
2,972,474	-		LU632_RS15695	0.76	-0.2
2,972,599	-				+0.2
2,972,620	+				+0.9
2,972,622	+				-1.0
2,972,645	-	yqaB	LU632_RS15700	0.13	-3.0
2,972,645	-	yqaB	LU632_RS15700	0.13	+1.2
2,972,737	+	yqaB	LU632_RS15700	0.30	+1.5
2,972,848	-	yqaB	LU632_RS15700	0.49	-2.0
2,972,985	+	yqaB	LU632_RS15700	0.73	+0.8
2,972,986	-	yqaB	LU632_RS15700	0.74	+0.3
2,973,000	+	yqaB	LU632_RS15700	0.76	-2.6
2,973,012	+	yqaB	LU632_RS15700	0.78	+0.3
2,973,042	+	yqaB	LU632_RS15700	0.83	+0.8
2,973,123	-				-1.4
2,973,131	+				-2.0
2,973,131	+				-0.2
2,973,131	+				+0.8
2,973,131	+				+1.5
2,973,132	-				-2.0
2,973,132	-				-3.2
2,973,132	-				-2.0
2,973,132	-				-1.8
2,973,132	-				-0.2
2,973,132	-				+0.8
2,973,136	-				-3.0
2,973,173	+				+0.9
2,973,174	-				+2.3
2,973,174	-				+0.4
2,973,184	-				+0.9
2,973,247	+				+1.6
2,973,364	+				+0.2
2,973,387	+				-0.4
2,973,458	-				-0.7
2,973,471	+				+0.8
2,973,472	-				-0.3
2,973,479	+				-0.5
2,973,480	-				+0.9
2,973,484	-				-0.6
2,973,512	+				-2.7
2,973,513	-				-2.0
2,973,514	+				-1.4
2,973,514	+				-0.6
2,973,514	+				+0.3
2,973,515	-				+0.2
2,973,515	-				-1.2
2,973,515	-				-1.1
2,973,519	-				+0.0
2,973,519	-				+1.7
2,973,531	+				+1.3
2,973,535	+				+0.8
2,973,536	-				+0.9
2,973,566	+				+0.3
2,973,567	-				+1.2
2,973,569	+				-0.2
2,973,892	+				+1.6
2,973,982	-				+3.6
2,974,055	+				+0.4
2,974,055	+				+1.1
2,974,257	-				-0.1
2,974,299	-				+2.1
2,974,306	+				-1.8
2,974,306	+				-0.3
2,974,307	-				+0.5
2,974,313	-				+0.3
2,974,313	-				-0.8
2,974,353	+				+0.8
2,974,353	-				+0.3
2,974,366	+				-0.4
2,974,370	+				+0.7
2,974,371	-				-0.6
2,974,384	+				+0.2
2,974,406	-				-0.1
2,974,406	-				+0.5
2,974,409	+				-0.5
2,974,409	+				+1.7
2,974,409	+				+1.8
2,974,410	-				-1.8
2,974,410	-				-1.2
2,974,410	-				-0.4
2,974,421	+				+2.6
2,974,421	+				-1.1
2,974,422	-				+2.5