Strain Fitness in Erwinia tracheiphila SCR3 around LU632_RS15630

Experiment: Experiment:TE2, Cucumber 5 Petiole 1 (TE2-S-C5-P1)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Experiment:TE2, Cucumber 5 Petiole 1 (TE2-S-C5-P1)
2,960,860	-		LU632_RS15615	0.73	-1.0
2,960,896	+		LU632_RS15615	0.78	+0.5
2,960,950	+		LU632_RS15615	0.85	+0.8
2,960,960	+		LU632_RS15615	0.87	+1.5
2,961,369	+		LU632_RS15620	0.81	-1.3
2,961,452	+				-1.6
2,961,646	+				-0.8
2,961,647	-				+1.6
2,961,650	+				-0.8
2,961,651	-				+0.4
2,961,656	-				+0.5
2,961,666	-				+3.2
2,961,727	+				+1.2
2,961,727	+				+1.2
2,961,728	-				-0.2
2,961,728	-				+1.3
2,961,728	-				-2.9
2,961,748	+				+0.4
2,961,748	+				+0.8
2,961,752	+				+1.2
2,961,753	-				-0.2
2,961,760	+				-2.6
2,961,920	+		LU632_RS15630	0.30	+1.0
2,961,944	+		LU632_RS15630	0.42	+1.3
2,961,980	-		LU632_RS15630	0.60	-0.5
2,962,038	-		LU632_RS15630	0.88	+2.1
2,962,071	+				+2.0
2,962,071	+				+0.9
2,962,224	-		LU632_RS15635	0.47	+0.3
2,962,298	-		LU632_RS15635	0.69	-0.8
2,962,322	-		LU632_RS15635	0.76	+0.3
2,962,370	-				-2.2
2,962,370	-				-0.5
2,962,405	-				-0.7
2,962,444	-				-1.4
2,962,545	+		LU632_RS15640	0.17	-1.8
2,962,579	+		LU632_RS15640	0.28	-2.8
2,962,639	-		LU632_RS15640	0.48	-2.6
2,962,677	-		LU632_RS15640	0.61	-2.7
2,962,767	+				+0.2
2,962,767	+				-0.7
2,962,768	-				-1.2
2,962,857	+				+0.8
2,962,893	-				+0.2
2,962,986	+		LU632_RS15645	0.12	-1.3
2,962,987	-		LU632_RS15645	0.12	-1.2
2,962,987	-		LU632_RS15645	0.12	-0.1