Strain Fitness in Erwinia tracheiphila SCR3 around LU632_RS15110

Experiment: Experiment:TE2, Cucumber 5 Petiole 1 (TE2-S-C5-P1)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Experiment:TE2, Cucumber 5 Petiole 1 (TE2-S-C5-P1)
2,864,801	+				+0.5
2,864,881	+				-0.0
2,864,884	+				+0.5
2,864,885	-				-2.6
2,864,924	+				-2.0
2,865,135	+				-1.4
2,865,288	+		LU632_RS15110	0.37	+1.4
2,865,289	-		LU632_RS15110	0.38	+0.1
2,865,289	-		LU632_RS15110	0.38	+3.2
2,865,370	+				+0.1
2,865,371	-				-0.7
2,865,372	+				+0.7
2,865,372	+				+0.2
2,865,372	+				-1.0
2,865,373	-				-0.8
2,865,401	-				+0.1
2,865,401	-				+1.7
2,865,417	-				+0.4
2,865,437	-				-0.2
2,865,585	-		LU632_RS15115	0.23	-0.6
2,865,585	-		LU632_RS15115	0.23	+3.3
2,865,587	+		LU632_RS15115	0.24	-0.0
2,865,714	-		LU632_RS15115	0.39	-1.8
2,865,839	-		LU632_RS15115	0.53	-0.1
2,865,839	-		LU632_RS15115	0.53	-0.9
2,865,881	-		LU632_RS15115	0.58	+0.7
2,865,961	-		LU632_RS15115	0.68	-0.8
2,865,998	-		LU632_RS15115	0.72	+0.5
2,866,295	+				+0.4
2,866,296	-				-0.1
2,866,370	+		LU632_RS15120	0.10	-3.0
2,866,371	-		LU632_RS15120	0.10	-0.6
2,866,375	+		LU632_RS15120	0.10	-0.5
2,866,375	+		LU632_RS15120	0.10	-0.4
2,866,376	-		LU632_RS15120	0.10	+3.9