Strain Fitness in Erwinia tracheiphila SCR3 around LU632_RS14720

Experiment: Experiment:TE2, Cucumber 5 Petiole 1 (TE2-S-C5-P1)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Experiment:TE2, Cucumber 5 Petiole 1 (TE2-S-C5-P1)
2,796,041	-		LU632_RS14710	0.37	+0.7
2,796,118	+		LU632_RS14710	0.55	-1.3
2,796,288	-				+3.3
2,796,323	-				+1.5
2,796,508	+				+0.7
2,796,508	+				-3.0
2,796,509	-				+0.4
2,796,567	-				-0.7
2,796,574	-				-0.1
2,796,583	-				-1.1
2,796,596	+				-1.6
2,796,597	-				+0.2
2,796,639	+				+2.1
2,796,640	-				+0.7
2,796,663	+				-0.3
2,796,663	+				+2.2
2,796,664	-				+1.7
2,796,681	+		LU632_RS14715	0.10	+1.1
2,796,890	-				-1.1
2,796,891	+				-1.6
2,796,891	+				-1.3
2,796,892	-				-0.6
2,796,892	-				-2.6
2,796,892	-				+0.4
2,796,892	-				+2.4
2,796,892	-				+0.4
2,796,933	+				-0.9
2,796,933	+				+1.2
2,796,933	+				+0.8
2,796,933	+				-1.0
2,796,934	-				-0.0
2,796,980	-				+0.5
2,797,001	+				-0.9
2,797,002	-				+0.1
2,797,031	+				+0.2
2,797,032	-				-0.3
2,797,074	+		LU632_RS14720	0.32	+1.4
2,797,074	+		LU632_RS14720	0.32	+0.7
2,797,075	-		LU632_RS14720	0.33	+0.1
2,797,078	+		LU632_RS14720	0.35	+0.0
2,797,079	-		LU632_RS14720	0.35	+3.5
2,797,138	-		LU632_RS14720	0.69	+1.4
2,797,181	-				+3.0
2,797,220	+				-1.8
2,797,220	+				-0.5
2,797,220	+				+1.1
2,797,262	+		LU632_RS14725	0.12	-0.3
2,797,275	+		LU632_RS14725	0.19	+2.9
2,797,275	+		LU632_RS14725	0.19	-1.8
2,797,319	+		LU632_RS14725	0.43	+0.6
2,797,421	-				+0.3
2,797,426	+				+0.2
2,797,426	+				+1.6
2,797,426	+				+1.4
2,797,426	+				+1.4
2,797,426	+				-0.4
2,797,426	+				+0.3
2,797,427	-				-0.3
2,797,427	-				+0.1
2,797,427	-				-0.3
2,797,500	+				+1.0
2,797,504	+				-0.5
2,797,504	+				-0.6
2,797,504	+				+0.8
2,797,505	-				+2.0
2,797,505	-				-0.3
2,797,635	+				-0.6
2,797,635	+				-0.0
2,797,765	+				+1.3
2,797,803	-				-0.0
2,797,803	-				+0.7
2,797,803	-				-2.5
2,797,835	-				+0.1
2,797,926	+	mfd	LU632_RS14730	0.12	+1.1
2,797,927	-	mfd	LU632_RS14730	0.12	-0.8
2,797,988	+	mfd	LU632_RS14730	0.14	-1.2
2,797,989	-	mfd	LU632_RS14730	0.14	-3.6
2,798,164	+	mfd	LU632_RS14730	0.19	-2.3
2,798,164	+	mfd	LU632_RS14730	0.19	-2.1
2,798,164	+	mfd	LU632_RS14730	0.19	-2.5
2,798,165	-	mfd	LU632_RS14730	0.19	-0.2