Strain Fitness in Erwinia tracheiphila SCR3 around LU632_RS14675

Experiment: Experiment:TE2, Cucumber 5 Petiole 1 (TE2-S-C5-P1)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Experiment:TE2, Cucumber 5 Petiole 1 (TE2-S-C5-P1)
2,789,929	+		LU632_RS14665	0.52	+0.2
2,789,929	+		LU632_RS14665	0.52	-0.3
2,789,929	+		LU632_RS14665	0.52	-0.1
2,790,030	-		LU632_RS14665	0.74	+1.9
2,790,222	+				+0.7
2,790,306	+		LU632_RS14670	0.27	+0.6
2,790,308	+		LU632_RS14670	0.27	-3.3
2,790,308	+		LU632_RS14670	0.27	+0.6
2,790,390	+		LU632_RS14670	0.54	-2.5
2,790,390	+		LU632_RS14670	0.54	+0.3
2,790,452	+		LU632_RS14670	0.73	+1.5
2,790,516	+				+0.2
2,790,545	+				+1.4
2,790,548	+				-0.5
2,790,584	+				+0.8
2,790,590	+				+4.2
2,790,590	+				-2.6
2,790,649	-				+0.5
2,790,685	-				-1.1
2,790,685	-				-0.2
2,790,685	-				+1.3
2,790,685	-				+4.9
2,791,006	-		LU632_RS14675	0.20	+1.7
2,791,557	+		LU632_RS14675	0.74	+1.0
2,791,590	-		LU632_RS14675	0.78	+0.3
2,791,677	-		LU632_RS14675	0.86	-0.7
2,791,703	+		LU632_RS14675	0.89	+0.7
2,791,704	-		LU632_RS14675	0.89	-1.9
2,791,704	-		LU632_RS14675	0.89	-1.8
2,791,985	-		LU632_RS14680	0.71	-0.2
2,792,206	+				-1.2
2,792,206	+				-0.8