Experiment: Experiment:TE2, Cucumber 5 Petiole 1 (TE2-S-C5-P1)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt LU632_RS14370 and LU632_RS14375 are separated by 66 nucleotides LU632_RS14375 and LU632_RS14380 overlap by 26 nucleotides LU632_RS14380 and LU632_RS14385 are separated by 62 nucleotides
LU632_RS14370: LU632_RS14370 - DUF4942 domain-containing protein, at 2,741,271 to 2,742,911
_RS14370
LU632_RS14375: LU632_RS14375 - excisionase, at 2,742,978 to 2,743,229
_RS14375
LU632_RS14380: LU632_RS14380 - phage integrase Arm DNA-binding domain-containing protein, at 2,743,204 to 2,743,797
_RS14380
LU632_RS14385: LU632_RS14385 - IS481 family transposase, at 2,743,860 to 2,744,900
_RS14385
Position (kb)
2742
2743
2744 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2
3 at 2741.986 kb on - strand, within LU632_RS14370 at 2741.996 kb on + strand, within LU632_RS14370 at 2741.997 kb on - strand, within LU632_RS14370 at 2742.334 kb on + strand, within LU632_RS14370 at 2742.334 kb on + strand, within LU632_RS14370 at 2742.378 kb on + strand, within LU632_RS14370 at 2742.379 kb on - strand, within LU632_RS14370 at 2742.450 kb on + strand, within LU632_RS14370 at 2742.450 kb on + strand, within LU632_RS14370 at 2742.512 kb on + strand, within LU632_RS14370 at 2742.513 kb on - strand, within LU632_RS14370 at 2742.513 kb on - strand, within LU632_RS14370 at 2742.513 kb on - strand, within LU632_RS14370 at 2742.590 kb on - strand, within LU632_RS14370 at 2742.590 kb on - strand, within LU632_RS14370 at 2742.798 kb on - strand at 2742.813 kb on - strand at 2742.813 kb on - strand at 2742.833 kb on + strand at 2742.834 kb on - strand at 2742.972 kb on - strand at 2743.196 kb on + strand, within LU632_RS14375 at 2743.291 kb on + strand, within LU632_RS14380 at 2743.518 kb on + strand, within LU632_RS14380 at 2743.522 kb on - strand, within LU632_RS14380 at 2743.588 kb on + strand, within LU632_RS14380 at 2743.632 kb on + strand, within LU632_RS14380 at 2743.633 kb on - strand, within LU632_RS14380 at 2743.644 kb on - strand, within LU632_RS14380 at 2743.735 kb on + strand, within LU632_RS14380 at 2743.736 kb on - strand, within LU632_RS14380 at 2743.808 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Experiment:TE2, Cucumber 5 Petiole 1 (TE2-S-C5-P1) remove 2,741,986 - LU632_RS14370 0.44 -0.3 2,741,996 + LU632_RS14370 0.44 +0.8 2,741,997 - LU632_RS14370 0.44 -3.3 2,742,334 + LU632_RS14370 0.65 +1.7 2,742,334 + LU632_RS14370 0.65 +1.9 2,742,378 + LU632_RS14370 0.67 -0.9 2,742,379 - LU632_RS14370 0.68 +0.5 2,742,450 + LU632_RS14370 0.72 +1.5 2,742,450 + LU632_RS14370 0.72 -1.6 2,742,512 + LU632_RS14370 0.76 -1.1 2,742,513 - LU632_RS14370 0.76 +0.2 2,742,513 - LU632_RS14370 0.76 -0.9 2,742,513 - LU632_RS14370 0.76 -0.9 2,742,590 - LU632_RS14370 0.80 +2.5 2,742,590 - LU632_RS14370 0.80 -0.4 2,742,798 - +1.4 2,742,813 - -0.4 2,742,813 - +0.0 2,742,833 + -0.6 2,742,834 - -2.3 2,742,972 - -0.2 2,743,196 + LU632_RS14375 0.87 -1.7 2,743,291 + LU632_RS14380 0.15 +0.9 2,743,518 + LU632_RS14380 0.53 -0.9 2,743,522 - LU632_RS14380 0.54 +0.5 2,743,588 + LU632_RS14380 0.65 +0.4 2,743,632 + LU632_RS14380 0.72 -1.6 2,743,633 - LU632_RS14380 0.72 +0.8 2,743,644 - LU632_RS14380 0.74 +0.9 2,743,735 + LU632_RS14380 0.89 -1.6 2,743,736 - LU632_RS14380 0.90 +2.8 2,743,808 - -1.6
Or see this region's nucleotide sequence