Strain Fitness in Erwinia tracheiphila SCR3 around LU632_RS13480

Experiment: Experiment:TE2, Cucumber 5 Petiole 1 (TE2-S-C5-P1)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Experiment:TE2, Cucumber 5 Petiole 1 (TE2-S-C5-P1)
2,570,060	-		LU632_RS13475	0.13	-0.1
2,570,060	-		LU632_RS13475	0.13	-1.6
2,570,328	-		LU632_RS13475	0.78	-0.4
2,570,419	+				-1.5
2,570,446	+				+1.0
2,570,450	+				-0.4
2,570,451	-				+1.4
2,570,453	-				+1.0
2,570,476	-				+1.4
2,570,565	-				-1.9
2,570,650	+				-0.9
2,570,653	+				+0.0
2,570,654	-				+0.3
2,570,679	+				+0.7
2,570,734	+				-1.1
2,570,734	+				+2.6
2,570,735	-				-0.5
2,570,863	-				+2.3
2,571,255	+	cutC	LU632_RS13480	0.35	+2.3
2,571,255	+	cutC	LU632_RS13480	0.35	+2.3
2,571,256	-	cutC	LU632_RS13480	0.35	+2.6
2,571,274	+	cutC	LU632_RS13480	0.37	+0.7
2,571,598	+	cutC	LU632_RS13480	0.80	+1.3
2,571,598	+	cutC	LU632_RS13480	0.80	+2.0
2,571,667	+	cutC	LU632_RS13480	0.89	+2.9
2,571,668	-	cutC	LU632_RS13480	0.89	+1.7
2,571,722	+				+2.0
2,571,731	-				+0.1
2,571,731	-				+2.7
2,571,783	+				+3.3
2,571,802	-				+3.5
2,571,802	-				-0.8
2,571,864	-				+0.9
2,571,998	-				-2.6
2,572,002	+				-3.3
2,572,077	+				+0.7
2,572,080	+				+0.8
2,572,126	+		LU632_RS13485	0.11	+0.5
2,572,127	-		LU632_RS13485	0.11	+0.7
2,572,239	+		LU632_RS13485	0.21	+0.7
2,572,422	-		LU632_RS13485	0.37	-1.6
2,572,535	+		LU632_RS13485	0.47	+0.7
2,572,536	-		LU632_RS13485	0.47	+0.7
2,572,692	+		LU632_RS13485	0.60	+0.4
2,572,740	-		LU632_RS13485	0.64	+0.3